YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr39a-PD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRNAFEELR VQLRTLKWLG VLRFTIDFNK CLVRENASEE RSAWLYLIGV VGITCSLIVY  60
   61 STYFPSHFIM GKHNTTGNCY ALINIRSCSI VTMLIYTQLY IQRFRFVALL QSILRFNQIS 120
  121 GSHREEGRFA FYYYTHLSLL IICMLNYAYG YWTAGVRLTT IPIYLLQYGF SYLFLGQVVV 180
  181 LFACIQQILL SILKYYNQVV LKNIKSSKES REFYYNFCKY NQVIWLSYTE INHCFGLLLL 240
  241 LVTGLILLIT PSGPFYLVST IFEGRFRQNW QFSLMSFTAI LWSLPWIVLL VLAMGRNDVQ 300
  301 KEANKTAKML TKVPRTGTGL DRMIEKFLLK NLRQKPILTA YGFFALDKST LFKLFTAIFT 360
  361 YMVILVQFKE MENSTKSINK F

Type	Start	End	Confidence
Cytoplasmic	1	42	0.97
Transmembrane Helix	43	64	0.94
Non-Cytoplasmic	65	79	0.89
Transmembrane Helix	80	100	0.81
Cytoplasmic	101	129	0.86
Transmembrane Helix	130	151	0.91
Non-Cytoplasmic	152	169	0.79
Transmembrane Helix	170	190	0.86
Cytoplasmic	191	233	0.88
Transmembrane Helix	234	255	0.90
Non-Cytoplasmic	256	271	0.84
Transmembrane Helix	272	295	0.85
Cytoplasmic	296	381	0.75