YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr39a-PC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFQPGELCA YYRLCRYLGI FCIDYNPTKK KFRLRRSVLC YIVHFALQAY LVGCISVMVT  60
   61 YWRRCFKSEL TTTGNHFDRL VMVIALGILV VQNAWLIWLQ APHLRIVRQI EFYRRNHLAN 120
  121 VRLLLPKRLL WLIIATNVVY MANFIKTCIF EWLTDASRLF VITSLGFPLR YLVTSFTMGT 180
  181 YFCMVHIVRL VLDWNQSQIN AIIDESADLK MTSPNRLRLR VCLEMHDRLM LLCNDEISLV 240
  241 YGFIAWLSWM FASLDVTGVI YLTMVIQTKK SIVLKLITNV VWLSPTFMTC AASFMSNRVT 300
  301 IQANKTAKML TKVPRTGTGL DRMIEKFLLK NLRQKPILTA YGFFALDKST LFKLFTAIFT 360
  361 YMVILVQFKE MENSTKSINK F

Type	Start	End	Confidence
Cytoplasmic	1	37	0.93
Transmembrane Helix	38	62	0.89
Non-Cytoplasmic	63	79	0.87
Transmembrane Helix	80	99	0.95
Cytoplasmic	100	128	0.84
Transmembrane Helix	129	150	0.67
Non-Cytoplasmic	151	166	0.60
Transmembrane Helix	167	190	0.75
Cytoplasmic	191	238	0.57
Transmembrane Helix	239	264	0.75
Non-Cytoplasmic	265	275	0.47
Transmembrane Helix	276	301	0.67
Cytoplasmic	302	349	0.49
Transmembrane Helix	350	368	0.58
Non-Cytoplasmic	369	381	0.34