YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr39a-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTRNRKLLF FLHYQRYLGL TNLDFSKSLH IYWLHGTWSS TAIQIVVVGV FMAALLGALA  60
   61 ESLYYMETKS QTGNTFDNAV ILTTSVTQLL ANLWLRSQQK SQVNLLQRLS QVVELLQFEP 120
  121 YAVPQFRWLY RIWLLVCLIY GAMVTHFGIN WLTTMQISRV LTLIGFVYRC VLANFQFTCY 180
  181 TGMVVILKKL LQVQVKQLEH LVSTTTISMA GVAGCLRTHD EILLLGQREL IAVYGGVILF 240
  241 LFIYQVMQCI LIFYISNLEG FHSSNDLVLI FCWLAPMLFY LILPLVVNDI HNQANKTAKM 300
  301 LTKVPRTGTG LDRMIEKFLL KNLRQKPILT AYGFFALDKS TLFKLFTAIF TYMVILVQFK 360
  361 EMENSTKSIN KF

Type	Start	End	Confidence
Cytoplasmic	1	16	0.66
Transmembrane Helix	17	34	0.31
Non-Cytoplasmic	35	39	0.47
Transmembrane Helix	40	60	0.90
Cytoplasmic	61	128	0.58
Transmembrane Helix	129	149	0.92
Non-Cytoplasmic	150	164	0.52
Transmembrane Helix	165	187	0.74
Cytoplasmic	188	199	0.61
Transmembrane Helix	200	219	0.55
Non-Cytoplasmic	220	229	0.43
Transmembrane Helix	230	255	0.87
Cytoplasmic	256	266	0.38
Transmembrane Helix	267	287	0.90
Non-Cytoplasmic	288	339	0.47
Transmembrane Helix	340	359	0.62
Cytoplasmic	360	372	0.67