YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9270-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.80
Transmembrane Helix	59	80	0.87
Non-Cytoplasmic	81	84	0.84
Transmembrane Helix	85	105	0.91
Cytoplasmic	106	174	0.89
Transmembrane Helix	175	194	0.78
Non-Cytoplasmic	195	213	0.65
Transmembrane Helix	214	233	0.63
Cytoplasmic	234	562	0.94
Transmembrane Helix	563	585	0.89
Non-Cytoplasmic	586	605	0.89
Transmembrane Helix	606	627	0.92
Cytoplasmic	628	675	0.83
Transmembrane Helix	676	700	0.75
Non-Cytoplasmic	701	703	0.60
Transmembrane Helix	704	724	0.77
Cytoplasmic	725	788	0.74
Transmembrane Helix	789	810	0.80
Non-Cytoplasmic	811	1145	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHPLMMGLM HLAMKMRVAV STAIYRKALR LSRTALGDTT TGQVVNLISN DLGRFDRALI  60
   61 HFHFLWLGPL ELLISSYFLY QQIGVASLYG IVILLLFLPI QTFLSRLTSR LRHQTALRTD 120
  121 QRVRMMNEII SGIQVIKMYT WEKPFGRLIE RLRRSEMSSI RKVNYIRGTL LSFEITLSRI 180
  181 AIFVSLLGFV LMGGELTAER AFSVTAFYNI LRRTVCKFFP SGMSQFAEMM VTLRRIKGFM 240
  241 MRSETEALYL KGGQTNKLFE GEPLVKLQSF QARWNHDHVE PVLENINISL SPPQLVAVIG 300
  301 PVGSGKSSLI QAILGELPGE SGKLKVQGDI SYASQEPWLF NASVRDNILF GLPMDKHRYR 360
  361 NVIRNCALER DFELLHGDRT FVGERGASLS GGQRARISLA RAVYRQADTY LLDDPLSAVD 420
  421 THVGRHLFEE CMRGFLRDKL VILVTHQLQF LEHADLIVIM DKGKISAVGT YEEMLKSGQD 480
  481 FGKLLATEAQ EMGDSNQEQV NAEGDSRNDK STYSRQSSRV SRVSVTSVDS STESILDNER 540
  541 QPAQESRSQG KIGLGIYGKY FSAGSGWLMV ILVAFFCLGT QILASGGDYF LSYWVKNNDS 600
  601 SSSTDIYIFS GINAALVIFA LLRTLLFFSM AMHSSTQLHN TMFQGVSRTA LYFFHANPSG 660
  661 RILNRFAMDL GQVDEILPAV MLDCIQIFLT ISGIIGVLCI TNPWYLINTI TMFLAFHFLR 720
  721 TFYLSTSRDL KRLEAIARSP MYSHFSATLN GLSTIRAMEA QDLLTKEYDN YQDIHSSGYY 780
  781 TFLSTNRAFG YYLDLFCVAY VISVTLMSYF NPPVDNPGQI GLVITQAMSM TGTVQWGMRQ 840
  841 SAELENSMTS VERVLEYRHL EAEGEFESPD DKKPPMNWPQ EGLISAEQLS LRYNPDPKAD 900
  901 RVLKSLNFII MPREKIGIVG RTGAGKSSLI NALFRLSYNE GSLVIDNTDI LGIGLHDLRS 960
  961 KISIIPQEPV LFSGTLRCNL DPFEQYADEK LWEALEEVHL KDEVSELPNG LESVVAEGGS1020
 1021 NYSVGQRQLV CLARAILREN RILVMDEATA NVDPQTDALI QSTIRRKFRD CTVLTIAHRL1080
 1081 NTIIDSDRVM VLDAGTLVEF GSPFELLTQS WSKVFYGMVL QTGRSSFEHL LKLALEAHER1140
 1141 RLLSQ