YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9317-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	132	0.66
Transmembrane Helix	133	151	0.95
Non-Cytoplasmic	152	158	0.75
Transmembrane Helix	159	181	0.86
Cytoplasmic	182	190	0.79
Transmembrane Helix	191	212	0.92
Non-Cytoplasmic	213	219	0.81
Transmembrane Helix	220	238	0.88
Cytoplasmic	239	311	0.94
Transmembrane Helix	312	332	0.88
Non-Cytoplasmic	333	339	0.79
Transmembrane Helix	340	361	0.85
Cytoplasmic	362	367	0.88
Transmembrane Helix	368	388	0.93
Non-Cytoplasmic	389	395	0.83
Transmembrane Helix	396	417	0.92
Cytoplasmic	418	426	0.79
Transmembrane Helix	427	449	0.91
Non-Cytoplasmic	450	456	0.74
Transmembrane Helix	457	476	0.93
Cytoplasmic	477	600	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTPDDYWC RIPELLDLPL EQRKSLSIPK ELDNDELVYS KCYTYGVNWT QLLESGEEDD  60
   61 LTTMEPNASW PLIKCPQGWE YNTSVVWSSI VIDFDLVCDQ DIYPTIGLAA LNTGGPVGVY 120
  121 LFGLLNDRGG RRLSYFVCLA TLLAGSLMTS LSKDFWTWAG SRVIVGLTIP AVYQIPFIIS 180
  181 LELVGENYRS FVTVMTCTFY TSGIMLLSGV TYLERDWVRL SYITSLPFYA YFLYMFVMPE 240
  241 SPRWLLMRGR LEEALKILER MAKVNGREFP EAVHLKLEAQ IRRDKLKKQK KKMANVGLAD 300
  301 LCRTPNMRLK TILITLSWFA NETVYLGLSY YGPALGTNQY VSFFLSAVVE LPSYLCCWYF 360
  361 MDTWGRRWPL SLSMILGGVA CVITVMLPDD AVDETLVLYL VSKALLSASF LIIYPFAGEL 420
  421 YPTQVRGIGI GASSYIGGLG LIGIPFITYL GKDNLKLPLV IMGFLSMLGG MTGLRLPETL 480
  481 HHRLPQTIEE GEEFGKNWQF KDCCRCAQKP EILSQPASYE NLDVLAGSST NASEVELELR 540
  541 DSRRVREPAP RIDERTPLDT TASGSGRPVH RPSMKRLVRQ MSVMDTQRTH DGTMQLTHWI 600
  601