YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bwa-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGMGGGGLL DIYAMAWEHL RPGSSPVDWC EGNYLISSNI AEFVNTFSNF LFILLPPVLI  60
   61 MLFKEYGRFV TPGIHVIWVL LIVVGLSSMY FHATLSLIGQ LLDELAILWV FMAAFSLFYP 120
  121 KRYYPKFVKN DRKTFSWLML LSAIAATGLS WWKPIVNAFV LMFMSVPTMV MLYTELQRVS 180
  181 DQRVYRLGIR STTVWAVAVF CWINDRIFCE AWSSINFPYL HGFWHIFIFI AAYTVLVLFA 240
  241 YFYVESELPQ RQPLLKYWPK NEFEFGIPFI SIRNPGKALR NTI

Type	Start	End	Confidence
Non-Cytoplasmic	1	42	0.81
Transmembrane Helix	43	63	0.78
Cytoplasmic	64	73	0.79
Transmembrane Helix	74	93	0.94
Non-Cytoplasmic	94	104	0.66
Transmembrane Helix	105	120	0.96
Cytoplasmic	121	133	0.82
Transmembrane Helix	134	152	0.92
Non-Cytoplasmic	153	157	0.69
Transmembrane Helix	158	176	0.86
Cytoplasmic	177	186	0.79
Transmembrane Helix	187	208	0.77
Non-Cytoplasmic	209	221	0.83
Transmembrane Helix	222	244	0.93
Cytoplasmic	245	283	0.93