YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Hs2st-PA
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRKLLKMWI LLRPTHWLIL IALCAVTCAG YWLLWSEIRL EHAFKPLSKL GDSLSPDQHA  60
   61 SSTTDDFDFE EHLVVLYNRV PKTGSTSFVN IAYDLCKPNK FHVLHINVTA NMHVLSLPNQ 120
  121 IQFVRNVSRW HEMKPALYHG HMAFLDFSKF QIAHKPIYIN LVRKPLDRLV SYYYFLRFGD 180
  181 NYRPNLVRKK AGNKITFDEC VVQKQPDCDP KNMWLQIPFF CGHAAECWEP GSSWALDQAK 240
  241 RNLVNEYFLV GVTEQMYEFV DLLERSLPRI FHGFREHYHN SNKSHLRVTS SKLPPSESTI 300
  301 KSIQKTKIWQ MENDLYDFAL AQFEFNKKKL MQPDNKHVQK FMYEKIRPK

Type	Start	End	Confidence
Cytoplasmic	1	15	0.55
Transmembrane Helix	16	35	0.61
Non-Cytoplasmic	36	349	0.98