YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0300799, FBp...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSPRVALLF LALALSQPDE LVEAAGPLKV LGLFPHPGVS HFHFFHPIMK GLAEAGHDVS  60
   61 VVSHFPDKHP VAHYKDFPLT GMDKLTNSVD LKFFEKRTFY SHFQEFFLLY DWGKQTCNLT 120
  121 LRSEALQQIL RRPGRFDVII MEQFNTDCMM GVAHQLQAPV IALSSCVMMP WHYERMGAPL 180
  181 IPSHIPALFM AQSQHMNFGG RLANWFSTHA LNWMYKLLSV PAADAMVQYK FGHDVPSVGE 240
  241 LVKNTSMFFV NQHYSLSGPK VTPPNVIELG GIHIQKSKPL PADLQRILDN AEEGVILISW 300
  301 GSMIRANSLS AAKRDGIIRA VARLKQKVIW KWENETLPNQ PPNMHIMKWL PQRDILCHPN 360
  361 VKVFMSHGGL MGTSEAAYCG VPVVATPMYG DQFVNTAALV ERGMGTILNF EDIGENTVMR 420
  421 ALKKALDKKF HDAAKVVSHS FHHRPQQALH TAIWWVEHVA HTGGAPLLKP SAVEMSRFVY 480
  481 YSLDVYAVLA LVLGSIIASW VWLLRLCCGS SAAQKTKKD

Type	Start	End	Confidence
Signal Peptide	1	24	0.97
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	484	0.98
Transmembrane Helix	485	504	0.94
Cytoplasmic	505	519	0.82