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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: rdo-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFKWLLFSL CIMPAMFSNT KRKCPTECQC SMDDLDRYQA ICTKGGLNSL LSPNELDVDV  60
   61 KVIIIRGPRN SITIGPALRQ FMKLEILRIT DSNLPAIGAE SFWGLKYLRI LDLSKNNITN 120
  121 ITENNFRGQD NLLELDLSKN KVLRMASSTF RHLTDLRRLN LADNSIVELV QRNFFMLSRL 180
  181 KYLDLSGNPL QDLQPDVFRD VPELKVLKCR NCQLKKINPQ MYNLLPLLSE LDLGRNEFKF 240
  241 LDKDEFRDVK RLTKVLLDGN QLSVVVDQLF RMQKSLNHLD LSYNRLAKVP NDSFLQLTNL 300
  301 TFLDLSYNKL VRLEPQSIRS LSNLLTLNIS GNVLMDLREM RETFELIPQL THLAIADMGT 360
  361 MPVGLLHPFK QLRYLNISGN SLNNTALEVI DPCRELEFLD LSRNQLHGIS EDTVLRIQGI 420
  421 RNVRLDNNPL ICDECHMGKL INVVRQLQWK WDTYPICFLP KSLRGAEINN LDINGLHTCL 480
  481 TFITDEEQNA ASTSYNFLEH GGLNTLAILG GIIFVLIAVI ILSLVACFSK NRARYYTRED 540
  541 HLNGSESKCL EKNLEATTIT TLGNGSSPTT TTTLTLATSP AAPNGPKTNG QGLSLSPANG 600
  601 STPVHGISDD KGKEINFTFP VDDRVCTIDE LMPSPPPPPQ QHPHPNMGSL MYSVSHSPNS 660
  661 ATTLAAVAAA ATVIPPGAPS HSSMPTPTPT PAEAVVVVLP PPPLPPQQHH HQMDGSLASL 720
  721 REVQQQLVHL SSTLEPLVSV N

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle