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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|22946730, gi|...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHITRKRLL TLDEESQHIN STKRCGSNCI EKMLTKWSRQ SIPGVNSISR KRSFPWEDNS  60
   61 PDIFPAKHSR KHIIKKKSKT IHEPEVPIDF LMGLPVLLDS DFSDSEECRP KSEIHVAKPE 120
  121 TEDNRDLFTY QQLKLMCCEM MKQCEDRVVL EYEIALTQKM AEQYDTFIKF NHDQLQREST 180
  181 NIRYQITGGN IGNAFAVQNT TGVIYVASPL DYETRPRYEL RLEATRNRKN NYTTVVINVR 240
  241 DVNDNPPVFD RQTYRTQITE EDDRNLPKRI LQVTATDGDV DRPINIVYFL TGQGIDPDNP 300
  301 ANSKFDINRT TGDIFVLKAK TKRLTGPKHS HTQATHNKRM LKGIFIEWMA FISSLAMQFR 360
  361 VDNSFNEKSN NRLLCPLDRD QPNGRPQWRF TVFAQDEGGE GLVGYADIQV NLKDINDNAP 420
  421 QFPQGIYFGN VTENGTAGSS VMTMSAVDYD DPNESTNAKL IYSIEKNVIE EETGAPIFEI 480
  481 EPETGLIKTA VCCLDRERTP DYSIQVVAMD GGGLKGTGTA SIRVKDLNDM PPQFTKDEWV 540
  541 TEVDETNGTY IPETPILTVT VQDEDETNTF QYKVVPNSGF GADKFAMVRN GDGTGSLKII 600
  601 QPLDYEDPLQ SSGFRFRIQV NDKGDDGPGG SDKYHVAYSW VVVKLRDIND NVPKFDREHI 660
  661 EVSIYEDTKV GTILEQFKAT DADQGGHSKV AYKIVRSTNR KRQFAISDRG AVSIQRPLDR 720
  721 ETQDRHHIQI LAIDDGSPAR TATATLTVIV KDVNDNAPTF AQDYKPTLPE NVSGKKILEV 780
  781 AAKDPDDRLR GNGGPFTFRL DPLASDEIKA GFKVEYDRRG DNENGVAIIS SLRPFDREAQ 840
  841 KSYAIPIEIK DNGAPAMTGT STLTVTIGDV NDNKMQPGSK SVLVYNYQGQ SQDTPIGRVY 900
  901 VNDPDDWDVP DKKYYWEVQE HQRFKLDTDT GILTMRAGTR RGRYQLRFKV YDREHGQEDI 960
  961 PANLSVTVRD ITAEAVQQAG SMRLSHITDE DFVRTWNPVK NQVEPSKLER FRNKLAELLY1020
 1021 TDRDNVDVFS VQLKEGSPYP LTDVHFAARS ATQQPYFKAV RLNGVVQMHR EEIEKDVGLN1080
 1081 ITMVNINECL HEGKGKCGSN SCTSKVELGK KPYTVSVNRT ALVGVRLDIS AQCVCRARNF1140
 1141 THQDHNCRTH LCYNGGRCVE TRNGPKCVAC PVGYNGPRCQ QSTRSFRGNG WAWYPPLQLC1200
 1201 QESHLSLEFI TRVADGLILY NGPIVPPKPE ETVISDFIAL ELEQGYPRLL IDFGSGTLEL1260
 1261 RVKTKKTLDD GVWHRLDIFW DTENVRMVVD FCRTALVSEM EDGTPPEFDD NACQARGQIP1320
 1321 PFAESLNLNQ PLQLGGLYRQ HFDQTLYNWQ YAFSSKGFDG CIRNVIHNSE HYDLAFPALA1380
 1381 RNSFPACPQT DEVCLKTEHT ARCWEHGNCV ASLVQAKCHC QPGWMGPGCN VPTIPTTFKA1440
 1441 QSYVKFALSF EPDRFSTQLQ LRFRTREQGG ELFRVSDQHH REYAILELRR GHLQFRYNLN1500
 1501 SMRNEEQLLT LTAIAVNDGQ WHVIRISRYG SAALMELDGG ESRRYNESFH FTGHQWLTID1560
 1561 KQEGVYAGGK AEYTGIKTFE VQSDFQRSCL DDIRRRWPAT WSATAPRTGR ARMSSVPIPL1620
 1621 TASTCGTNTS ALVGSSSRSA LLEFVSLTQD TKMSDKELSS IGIRNDFNLN VHNVCEGCSE1680
 1681 GRIMSSDTKG CVDRNECLDL PCLNGATCIN LEPRLRYRCI CPEGYWGENC ELVQEGQRLK1740
 1741 LSMGALGAIF VCLIIILSQC KCVFSYAMHD NLFSFRQLVW DLKGFSISAT LWALFRMAFI1800
 1801 YTYISVNSGK RLLALIFVLY SRKRKTTKKK KRSGPEKDVR ETVISYEDEG GGEDDMTAFD1860
 1861 ITPLQIPISA QGGPPDIAAC KMPIIYPVMT LLPPGQELNV AYLMEERKQR IDKDNNAPPF1920
 1921 DDLRNFTFEG SGSIAESLSS LASGTDDENQ DFNYLQNWGP RFNALAAMYV HDKAKASSQL1980
 1981 PSDGGGGSGD GPGPGASSSS PLGGGGTGGG SGIPGNVLAV VATGSGAGPG GGGGSTRKLN2040
 2041 QTKPEFGQLP ENVEQCNICV PPTGERARLP TGARSQVASE NRESRAGKAA LKAATEPTQP2100
 2101 QKLAERGGNL IKDFWMPANP AIRLLTLPND AWCLHFRPRH CGIWCPKRAA KSRQRCPNGS2160
 2161 RRKEATLGAS SERQSSTERL TGQHALPLTE NQKLSANWMN LRQFWGQSLL GRKKC

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