YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr36d-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEKKGHEIP LRNSRKKWLS HLLRWSVSSI CWISYIIYRG VVVGQMKFDP RNRKMIIHPR  60
   61 NIWTKRISLL LKILAMLWDY YFIQYLCSAI LPIFSNKSER FFNNLIEAIA VQLSLWNTAR 120
  121 LYSWLNSLSW NRSFVDRVND VIRLNGHLKS ILGPLSLDSI SLLILYVVHL QFTVLQTINH 180
  181 PYMIPMVNTL LLGLICNVYV AYQMLLLSWI AAINNFLKYS QPEQQPNRKQ RKNLLRLLRI 240
  241 YAKISNVHQD IKVLWLPVAS MLFSNIVELV RNWSYIIEWI FFHRRKTVMQ KWSFIFWKYL 300
  301 GGGLAPLLRM LLIGLCNDRL VQMQDFLNLQ LLIIDLRHTK FKQLDGNFVS QFKSLQTCFD 360
  361 LQLRAQPIRN QIMSLNQECG CPFALDFFFC TVLNSISCVQ YKMANEINND

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	42	0.88
Non-Cytoplasmic	43	76	0.81
Transmembrane Helix	77	94	0.76
Cytoplasmic	95	103	0.67
Transmembrane Helix	104	124	0.54
Non-Cytoplasmic	125	150	0.61
Transmembrane Helix	151	175	0.74
Cytoplasmic	176	185	0.50
Transmembrane Helix	186	212	0.76
Non-Cytoplasmic	213	252	0.65
Transmembrane Helix	253	275	0.66
Cytoplasmic	276	293	0.83
Transmembrane Helix	294	315	0.88
Non-Cytoplasmic	316	410	0.81