YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr36c-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLESFLLGA VYYYGLFIGL SNFEFDWNTG RVFTKKWSTL YAIALDSCIF ALYIYHWTGN  60
   61 TNIVNAIFGR ANMLHEYVVA ILTGLRIVTG LFTLILRWYQ RCKMMDLASK VVRMYVARPQ 120
  121 VRRMSRWGIL TKFIFGSITD GLQMAMVLSA MGSVDSQFYL GLGLQYWMFV ILNMAMMQQH 180
  181 MIMLFVRTQF QLINTELRQV IDEAKDLLLS PRHQGVFMTK CCSLADQIEN IARIQSQLQT 240
  241 IMNQMEEVFG IQGAMTYGGY YLSSVGTCYL AYSILKHGYE NLSMTLSTVI LAYSWCFFYY 300
  301 LDGMLNLSVM LHVQDDYWEM LQILGKRTIF VGLDVRLEEA FENLNLQLIR NPLKITVVKL 360
  361 YDVTRSNTMA MFGNLITHSI FLIQYDIEHF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.58
Transmembrane Helix	8	25	0.64
Cytoplasmic	26	36	0.86
Transmembrane Helix	37	57	0.94
Non-Cytoplasmic	58	76	0.91
Transmembrane Helix	77	99	0.90
Cytoplasmic	100	127	0.98
Transmembrane Helix	128	150	0.89
Non-Cytoplasmic	151	157	0.80
Transmembrane Helix	158	182	0.75
Cytoplasmic	183	253	0.95
Transmembrane Helix	254	275	0.67
Non-Cytoplasmic	276	281	0.66
Transmembrane Helix	282	301	0.82
Cytoplasmic	302	390	0.74