YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Gr36b-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDWVVLLLK AVHIYCYLIG LSNFEFDCRT GRVFKSRRCT IYAFMANIFI LITIIYNFTA  60
   61 HGDTNLLFQS ANKLHEYVII IMSGLKIVAG LITVLNRWLQ RGQMMQLVKD VIRLYMINPQ 120
  121 LKSMIRWGIL LKAFISFAIE LLQVTLSVDA LDRQGTAEMM GLLVKLCVSF IMNLAISQHF 180
  181 LVILLIRAQY RIMNAKLRMV IEESRRLSFL QLRNGAFMTR CCYLSDQLED IGEVQSQLQS 240
  241 MVGQLDEVFG MQGLMAYSEY YLSIVGTSYM SYSIYKYGPH NLKLSAKTSI IVCILITLFY 300
  301 LDALVNCNNM LRVLDHHKDF LGLLEERTVF ASSLDIRLEE SFESLQLQLA RNPLKINVMG 360
  361 MFPITRGSTA AMCASVIVNS IFLIQFDMEF F

Type	Start	End	Confidence
Cytoplasmic	1	38	0.82
Transmembrane Helix	39	60	0.93
Non-Cytoplasmic	61	76	0.93
Transmembrane Helix	77	99	0.90
Cytoplasmic	100	127	0.91
Transmembrane Helix	128	146	0.90
Non-Cytoplasmic	147	161	0.86
Transmembrane Helix	162	186	0.85
Cytoplasmic	187	363	0.73
Transmembrane Helix	364	386	0.85
Non-Cytoplasmic	387	391	0.61