YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG17928-PA, FBpp...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPNVKDDGD WRVSGISRNY PSYRQHRPIT SESWLEGKNV DDEAEGLWRI NDTLYDLSDF  60
   61 AARHPGGSSW IECTRGTDIT EPFESHHIEE RARGMLSKFE VRKAARPRNY KFTLEENGFY 120
  121 MTLKRRVREK LRKIDYSPTK KTEFLHLGIL VSVFLFSWAG TVLDSLIFKG LAGLALCWVA 180
  181 TSTHNYFHQR DSWRMYTFNL TMMNFRNWRI SHALSHHVYA NSLHDLEMSM FEPFLCWIPD 240
  241 SHYASKPQRL ISVVISPVVY VVLFQGQFLI RLVLSLTKRN VLCWDDLIGF SLPIFIYLST 300
  301 GVSLLSALLS WEIIISVGSF IFGLVGLTAA HHDPRILHDG DAQRQDFDWG LYQVDTIIDR 360
  361 GDIKWSDLLV LTHFGEHALH HLFPTLDHGV LKHLYPELRK TMKEFDVELR EINHWSHIKG 420
  421 QNQQLLRTEK NPIPPGSKKL M

Type	Start	End	Confidence
Cytoplasmic	1	141	0.97
Transmembrane Helix	142	162	0.87
Non-Cytoplasmic	163	166	0.76
Transmembrane Helix	167	187	0.84
Cytoplasmic	188	207	0.79
Transmembrane Helix	208	223	0.39
Non-Cytoplasmic	224	249	0.51
Transmembrane Helix	250	270	0.75
Cytoplasmic	271	280	0.63
Transmembrane Helix	281	301	0.76
Non-Cytoplasmic	302	307	0.50
Transmembrane Helix	308	330	0.81
Cytoplasmic	331	441	0.87