YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Cyt-b5-r-PA, FBp...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIEEWKKSG IATKFPTYRN SALITTHSWQ KGKRQDDGAE GLWRINDGIY DFTSFIDKHP  60
   61 GGPFWIRETK GTDITEAFEA HHLTTAPEKM IAKYKVRDAA EPRIYTLTLE EGGFYKTLKE 120
  121 RVREQLKTID KRPKKKSDLI HLGLVVSLYL LGIASAKYNS LLALVLASVA LCWTVIVSHN 180
  181 YFHRRDNWQM YAFNLGMMNF AAWRVSHALS HHIYPNSYFD LELSMFEPLL CWVPNPHIKS 240
  241 KLMRYVSWVT EPVAYALAFF IQMGTRIFYS LRHTNILYWH DLLPLTIPIA IYLGTGGSLG 300
  301 IWICVRQWLA MTSIASFSFC LIGLNAAHHD PEIYHEGDAN REDRDWGLFQ VDTIIDRGDL 360
  361 KWSQFLVLTH FGDHVLHHLF PTLDHGLLPA LYPVLYQTLD EFKGHLRECN HIEHMIGQHK 420
  421 QLLRIEPNPR APGAGK

Type	Start	End	Confidence
Cytoplasmic	1	136	0.99
Transmembrane Helix	137	156	0.88
Non-Cytoplasmic	157	160	0.83
Transmembrane Helix	161	182	0.92
Cytoplasmic	183	190	0.85
Transmembrane Helix	191	211	0.57
Non-Cytoplasmic	212	247	0.49
Transmembrane Helix	248	270	0.76
Cytoplasmic	271	276	0.42
Transmembrane Helix	277	304	0.74
Non-Cytoplasmic	305	307	0.31
Transmembrane Helix	308	327	0.56
Cytoplasmic	328	436	0.72