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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: chif-PA
Protein type: Globular with Signal Peptide
Type Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPQSDKQSA SRLATTTSHS TAAASATAAT PPKVKVIKSK RPLCHFKFYL DICDHQLAKR  60
   61 IESDIKALGG HLEFFLSDDI THFVTDKPEV IGGTSGTPGT PSTPGTPTSH YQQNDGSARK 120
  121 PNQRQSRADA ILSRVRRSTV GVVNSGNSTP TTSLKRSYTI WQTDYAQRFI KRIQTELKQY 180
  181 LEGKKEGGGG STSASPHHIQ LKKQYVKIES VKRNYRPYYH LIKQPDDWPK IDLSSEDGAF 240
  241 RLLTKSKTKD KEHSMTRKPL GSRTSQKDKQ AAGEAKPLQH PSLQELKKQS AIPNSPRSNC 300
  301 REPIDSSEKQ GGVCEICKLE YDILNIHLQS KDHELFAKNS DNFLALDTLI QSSADVNRFL 360
  361 EEEPVESELD MDVDESLSNE ELQSPRQRPS PALREKSKRI TKGKHSSEKF QGVAVASPQT 420
  421 PFPGAKKVQG NSPGSLSELQ RQEHPTTAAA TPTTNSGRRK TQNSGLSPPK RAMLPPSSIY 480
  481 KVVETREECA TPPRGRGRPP NQVDSPSLIV KFQKIRQTEL QRLNGEAENF MFPRTAVPTT 540
  541 RSSSELPTDV DRQTTSDVRG RYSISSASLD TSTSEAETKE SSGLPTSIRK RAQAVGRRRK 600
  601 VGGAAAQDVF QRQLSTGSSS SNSNQQRFPS APIQPEEGPQ PQPKPQLKIK IKQEQLVATR 660
  661 KSSRTATAIV TAATASSHQQ QQLRQTTCRK MANKLEDRMG ELVKPKIKIK KEVIEEQKVK 720
  721 ELEDLEEILD KELDEEVDSS CSSGSDEDYI AGSQRRITAA PRKSTDTREQ RAARRLSRLT 780
  781 INRSAGELEL TEVKTSPSKS RTKIQKPSSP TKNKVKQTKA VPPAIDLFFD CSKSERLREM 840
  841 QYTFESLPSG ELWNRVFLRQ DAGEENYYTY YGSTNYRKLP YEMGPIPMAK TLPAHSCALC 900
  901 REASEVKQDK GEQIKLEDQK PAPKKEVKKE EEVQSSSSSA TYKNKKLHLL QRYQQEQEQL 960
  961 QQLEGNSLAT AGAKCDSKAS TPELLEREFA SGSMGDRVQL IERVRSTSSS SCSNSQRSGI1020
 1021 TCRNKQLARI AELPPRKSPR EHASTLALVS CIIRQRQDSQ SKTNSEAEEP PPPVAAPKLK1080
 1081 TPIKQEPVAP SSPRTTRSQA ATPVEELRFA TEISETVKRM RRGQNKYDHS PPAPVPTPAT1140
 1141 SSPVRSRRLT PAARNQSQIY SRRLEFATSQ RESSASALLG KRKRRVNPSV AGTVRPTTQN1200
 1201 LPGTGAYRGV RKLPSKKGLL EYEMETCALK ALDQARQYCN PGFVAWQLDK YLELAGKEYD1260
 1261 IEFDQISPEV ESEGREERLV NTPQTPPPTD CFTSEFDLCD LIMGSAGSGD DDEDVSRGNP1320
 1321 PGSGRRMSNL NLYASYYRKR KSLKSNRTGW PKAQRRRNAG GLGGSRALPD ERINFQKMGL1380
 1381 AELHPIKQEP METEEEQTTT TTTTTTTSAT RGNLLSKDDE DDEGGGNSPS GGSPADDKQN1440
 1441 SREDAVMTPP ATDVDEQAEP QADEMESLPD EDETMADSVD QQQDVEAEIE ATDADVEEEE1500
 1501 EEEDEDEDVF EDAYEEQDMG IQKTEPHEKR ARIPSISVTT PPEDSSQGKK LLLTLHNGQR1560
 1561 LQATSTPSTG QVQQHQRRTP QLNGSLGSCI SPSEKLGDNS DIFTVSSDGL DTDLDLSNTQ1620
 1621 AGDSHEHCPH QTTPKRKFDI SKYAPPNSGK AASSCAAEAA TAAVKSLAIS QFLKKETCAS1680
 1681 SSSMRNAWRR TQRRAISAAC ISAAPSARVP N

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