YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	heix-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.88
Transmembrane Helix	67	88	0.82
Non-Cytoplasmic	89	97	0.66
Transmembrane Helix	98	122	0.78
Cytoplasmic	123	147	0.72
Transmembrane Helix	148	170	0.89
Non-Cytoplasmic	171	176	0.62
Transmembrane Helix	177	197	0.86
Cytoplasmic	198	201	0.52
Transmembrane Helix	202	224	0.84
Non-Cytoplasmic	225	230	0.51
Transmembrane Helix	231	247	0.49
Cytoplasmic	248	260	0.68
Transmembrane Helix	261	282	0.70
Non-Cytoplasmic	283	287	0.52
Transmembrane Helix	288	311	0.73
Cytoplasmic	312	332	0.79
Transmembrane Helix	333	353	0.93
Non-Cytoplasmic	354	359	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSSQLLPN GNLSRNGKTK TEDGEEVEAV VGARAAGADA GVALTGRLTG HPSTSGTFMK  60
   61 LKTYLLALRP WSLSASLVPT LLGSALAYRS QWAEEFSLAT FFLTAFTVVT VHCAGNVVNT 120
  121 YFDFIKGIDK QKADDRTLVD HILTKDEVVS LGAILYMAGC GGFVLLAVLS PAKMEHLALI 180
  181 YFGGLSSSFL YTGGIGFKYI ALGDLVILIL FGPISVLFAF MSQTGHLDWT TMGYAIPLAL 240
  241 NTEAILHSNN TRDADNDRRA GIVTLAILIG RTASHVLYAM LLFAPYSLFF IFGLKYSLWF 300
  301 LLPLVTLPQA FQIEKRFRNE QTMHLVPRQT AKLNFFFGIL YVVACCCAHQ LPTFGLRRN