YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ca-alpha1D-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	618	0.86
Transmembrane Helix	619	638	0.91
Cytoplasmic	639	654	0.74
Transmembrane Helix	655	676	0.86
Non-Cytoplasmic	677	685	0.76
Transmembrane Helix	686	707	0.86
Cytoplasmic	708	723	0.77
Transmembrane Helix	724	742	0.68
Non-Cytoplasmic	743	747	0.62
Transmembrane Helix	748	770	0.88
Cytoplasmic	771	818	0.82
Transmembrane Helix	819	839	0.72
Non-Cytoplasmic	840	855	0.86
Transmembrane Helix	856	877	0.94
Cytoplasmic	878	984	0.97
Transmembrane Helix	985	1004	0.94
Non-Cytoplasmic	1005	1018	0.87
Transmembrane Helix	1019	1039	0.80
Cytoplasmic	1040	1047	0.69
Transmembrane Helix	1048	1067	0.74
Non-Cytoplasmic	1068	1111	0.72
Transmembrane Helix	1112	1134	0.88
Cytoplasmic	1135	1150	0.70
Transmembrane Helix	1151	1167	0.76
Non-Cytoplasmic	1168	1186	0.75
Transmembrane Helix	1187	1207	0.89
Cytoplasmic	1208	1323	0.95
Transmembrane Helix	1324	1339	0.36
Non-Cytoplasmic	1340	1341	0.23
Transmembrane Helix	1342	1366	0.71
Cytoplasmic	1367	1384	0.45
Transmembrane Helix	1385	1406	0.77
Non-Cytoplasmic	1407	1417	0.60
Transmembrane Helix	1418	1444	0.79
Cytoplasmic	1445	1464	0.62
Transmembrane Helix	1465	1493	0.69
Non-Cytoplasmic	1494	1550	0.57
Transmembrane Helix	1551	1572	0.55
Cytoplasmic	1573	1588	0.63
Transmembrane Helix	1589	1614	0.86
Non-Cytoplasmic	1615	1665	0.63
Transmembrane Helix	1666	1688	0.78
Cytoplasmic	1689	1697	0.55
Transmembrane Helix	1698	1720	0.85
Non-Cytoplasmic	1721	1728	0.54
Transmembrane Helix	1729	1747	0.68
Cytoplasmic	1748	1814	0.81
Transmembrane Helix	1815	1834	0.92
Non-Cytoplasmic	1835	1908	0.78
Transmembrane Helix	1909	1929	0.91
Cytoplasmic	1930	2170	0.72
Transmembrane Helix	2171	2189	0.55
Non-Cytoplasmic	2190	2519	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGGELVNCI AYDDNTLVIE RKPSPSSPST SRRYLKAETP TRGSRKYNRK SSAKSDLEVV  60
   61 VVKPEHHHQH RSPTITLPVP ANPLTTSASA GSSPTGAGLA AGLGTASGTV LQQSCSALDP 120
  121 PEDSNQPSGT RRRPTSTELA LSNVTSQIVN NATYKLDFKQ RRHKSNNGGS ESGSLTGIAT 180
  181 GPATSPAGPT GPTSSSGKRR KSSCTSCGGG GISAPPPRLT PEEAWQLQPQ NSVTSAGSTN 240
  241 SSFSSGGGRD DNSSYSAVGG DSSSSNSCNC DITGDNSTLH GFGVGDVCSF IADCDDNSED 300
  301 DDGDPNNQDL SSQTLRTAAI VAAVAAAAKE QAQEQSLADC ESFSDRRQDA DEDVRIIQDC 360
  361 CGGNNDSLED VGEVDDNADV VVRKNSRNRP SIRRTCRITE EDDDEDENAD YGDFDREDQE 420
  421 LDDEEPEGTT IDIDEQEQQH DQGDSAEEED DDEDVDEYFE EEEDDTQAFS PFYSSSAELI 480
  481 DNFGGGAGKF FNIMDFERGA SGEGGFSPNG NGGPGSGDVS RTARYDSGEG DLGGGNNIMG 540
  541 IDSMGIANIP ETMNGTTIGP SGAGGQKGGA AAGAAGQKRQ QRRGKPQPDR PQRALFCLSV 600
  601 KNPLRALCIR IVEWKPFEFL ILLTIFANCI ALAVYTPYPG SDSNVTNQTL EKVEYVFLVI 660
  661 FTAECVMKIL AYGFVLHNGA YLRNGWNLLD FTIVVIGAIS TALSQLMKDA FDVKALRAFR 720
  721 VLRPLRLVSG VPSLQVVLNS ILKAMVPLFH IALLVLFVII IYAIIGLELF SGKLHKACRD 780
  781 EITGEYEENI RPCGVGYQCP PGYKCYGGWD GPNDGITNFD NFGLAMLTVF QCVTLEGWTD 840
  841 VLYSIQDAMG SDWQWMYFIS MVILGAFFVM NLILGVLSGE FSKERNKAKN RGDFQKLREK 900
  901 QQIEEDLRGY LDWITQAEDI EPDAVGGLIS DGKGKQPNEM DSTENLGEEM PEVQMTESRW 960
  961 RKMKKDFDRV NRRMRRACRK AVKSQAFYWL IIVLVFLNTG VLATEHYGQL DWLDNFQEYT1020
 1021 NVFFIGLFTC EMLLKMYSLG FQGYFVSLFN RFDCFVVIGS ITETLLTNTG MMPPLGVSVL1080
 1081 RCVRLLRVFK VTKYWRSLSN LVASLLNSIQ SIASLLLLLF LFIVIFALLG MQVFGGKFNF1140
 1141 DGKEEKYRMN FDCFWQALLT VFQIMTGEDW NAVMYVGINA YGGVSSYGAL ACIYFIILFI1200
 1201 CGNYILLNVF LAIAVDNLAD ADSLSEVEKE EEPHDESAQK KSHSPTPTID GMDDHLSIDI1260
 1261 DMEQQELDDE DKMDHETLSD EEVREMCEEE EEDSNSEVSA RVTARPRRLS EVSMKKTKKP1320
 1321 IPRGSAFFIF SYTNRFRVFC HWLCNHSNFG NIILCCIMFS SAMLAAENPL RANDDLNKVL1380
 1381 NKFDYFFTAV FTIELILKLI SYGFVLHDGA FCRSAFNLLD LLVVCVSLIS LVSSSNAISV1440
 1441 VKILRVLRVL RPLRAINRAK GLKHVVQCVI VAVKTIGNIV LVTCLLQFMF AVIGVQLFKG1500
 1501 KFFKCTDGSK MTQDECYGTY LVYDDGDVHK PRLREREWSN NRFHFDDVAK GMLTLFTVST1560
 1561 FEGWPGLLYV SIDSNKENGG PIHNFRPIVA AYYIIYIIII AFFMVNIFVG FVIVTFQNEG1620
 1621 EQEYKNCDLD KNQRNCIEFA LKAKPVRRYI PKHGIQYKVW WFVTSSSFEY TIFILIMINT1680
 1681 VTLAMKFYNQ PLWYTELLDA LNMIFTAVFA LEFVFKLAAF RFKNYFGDAW NVFDFIIVLG1740
 1741 SFIDIVYSEI KSKDTSQIAE CDIVEGCKST KKSAGSNLIS INFFRLFRVM RLVKLLSKGE1800
 1801 GIRTLLWTFI KSFQALPYVA LLIVLLFFIY AVVGMQVFGK IALDGGNAIT ANNNFQTFQQ1860
 1861 AVLVLFRSAT GEAWQEIMMS CSAQPDVKCD MNSDTPGEPC GSSIAYPYFI SFYVLCSFLI1920
 1921 INLFVAVIMD NFDYLTRDWS ILGPHHLDEF IRLWSEYDPD AKGRIKHLDV VTLLRKISPP1980
 1981 LGFGKLCPHR MACKRLVSMN MPLNSDGTVL FNATLFAVVR TSLSIKTDGN IDDANSELRA2040
 2041 TIKQIWKRTN PKLLDQVVPP PGNDDEVTVG KFYATYLIQD YFRRFKKRKE QEGKEGHPDS2100
 2101 NTVTLQAGLR TLHEVSPALK RAISGNLDEL DQEPEPMHRR HHTLFGSVWS SIRRHGNGTF2160
 2161 RRSAKATASQ SNGALAIGGS ASAALGVGGS SLVLGSSDPA GGDYLYDTLN RSVADGVNNI2220
 2221 TRNIMQARLA AAGKLQDELQ GAGSGGELRT FGESISMRPL AKNGGGAATV AGTLPPEANA2280
 2281 INYDNRNRGI LLHPYNNVYA PNGALPGHER MIQSTPASPY DQRRLPTSSD MNGLAESLIG2340
 2341 GVLAAEGLGK YCDSEFVGTA AREMREALDM TPEEMNLAAH QILSNEHSLS LIGSSNGSIF2400
 2401 GGSAGGLGGA GSGGVGGLGG SSSIRNAFGG SGSGPSSLSP QHQPYSGTLN SPPIPDNRLR2460
 2461 RVATVTTTNN NNKSQVSQNN SNSLNVRANA NSQMNMSPTG QPVQQQSPLR GQGNQTYSS