YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	beat-Ia-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFPQNAYQT ALTTILLALT LEMTAALRDV RVRVPHAVRR SEKAILKCFY DIEDDSLYSV  60
   61 KWYKGRREFY RYTPKETPPM KVFHFPGVKV RRVSSNESQV VLDAVTMATS GKYSCEVSAD 120
  121 APSFHTLIAA AELEVIETPH NAPFITGIRP RYRVGDILRG NCTSRHSRPA ANLTWTVNNE 180
  181 EVNPALVRHH KILRDARNDM ETAVVGIHFV VTDQHFDNGK LKLRCSAQLH DVYWKTTEKI 240
  241 ILETDLFPKH GNGANGNHVN PDDFYDQYAL HEDHLHNKKN SYLTQLQGEE DDGTEGGLGD 300
  301 GGAAWRGAGS SSSRLSPSSS QSCWMVGGSL MAVLSWTLAR QLVSPLQAMM TKTGGATCNM 360
  361 SGRCASRRTR AHGMRVSATK QKQKQRQMQQ EHRKSCLRVS KSSWKGRGYV CGCGFGRINS 420
  421 RCIRQLT

Type	Start	End	Confidence
Signal Peptide	1	26	0.98
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	321	0.99
Transmembrane Helix	322	343	0.74
Cytoplasmic	344	427	0.82