YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ZnT35C-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRNEDTPIA KRDSGRTRRS NYGTAPSFHL MEQGQPGVNV VAGNGNNNHP ATPATPAQIF  60
   61 CLHGRSNNVE VRDHCHRARS EGVDVKARRK LIIASILCLV FMIAEIVGGV LSNSLAIATD 120
  121 AAHLLTDFAS FMISLFAIWI AGRPSTQRMS FGWYRAEVIG AMASVFMIWV ITGILVWLAI 180
  181 GRLISGDYEV NAKIMLITSG LAILVNVIMG VQLQHGHSHG LGGGHGHSHG GSKNASHVQA 240
  241 TSTPCSDSPS QRIEGGVAYA PEDAELPGGG LPTFSYQNTK LVDPTLDLEI AAVLAETAPG 300
  301 SHHHGGPVGR EAVNMNVRAA LIHVIGDVIQ SVGVFVAAGV IYFWPEYSIV DPICTFVFSI 360
  361 IVLFTTFTIM KDALLVLMEG TPNYMHYAEV LQIFQGIEGV ERVHNLRIWA LSINKVALSA 420
  421 HLAIAENANP KRILDAATSA VHLRYNFFET TIQIEDYTAQ MESCLQCNVP EK

Type	Start	End	Confidence
Cytoplasmic	1	90	0.99
Transmembrane Helix	91	112	0.88
Non-Cytoplasmic	113	120	0.69
Transmembrane Helix	121	142	0.89
Cytoplasmic	143	157	0.88
Transmembrane Helix	158	181	0.88
Non-Cytoplasmic	182	191	0.85
Transmembrane Helix	192	213	0.89
Cytoplasmic	214	319	0.99
Transmembrane Helix	320	342	0.92
Non-Cytoplasmic	343	348	0.79
Transmembrane Helix	349	370	0.90
Cytoplasmic	371	472	0.97