YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mol-PE, mol-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVNVTLTAI PIGNWTPPDI DYNERFTWEG ANDMSANYRH ALQRGLPFPI LTVAEYFSLG  60
   61 REGFSWGGQY RAAGYFASIM LWASLASWLL MNLLLIAVPR YGAYMKALTG ALLVCTTVGY 120
  121 HCLLPKRPLS IHLEGGRLEF HFGWCYWLVL VAGILCFIAG VLISIIDLVW PHTFSTVLEV 180
  181 YYGTPYDRHV ILEESSDVRY RKPRNSRSLE DPPGLGSRIL RRLSSKARDL QPGTAPRRDS 240
  241 PAGVSSSGGV ENKGFQSDAP KSPWRYPFRR SQQMAQQQHS HPLHQHPLQQ HHQHHQHHHQ 300
  301 QQLQFVGGPV VQHPMHHMQR TMSQDSGSSI ASAAVQISPL HKHALARMLP NPPVERIRDM 360
  361 DHW

Type	Start	End	Confidence
Cytoplasmic	1	72	0.89
Transmembrane Helix	73	96	0.86
Non-Cytoplasmic	97	102	0.76
Transmembrane Helix	103	124	0.92
Cytoplasmic	125	143	0.88
Transmembrane Helix	144	166	0.95
Non-Cytoplasmic	167	363	0.91