YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0304790, mol...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGWFDAFRD DGGPTLYSFS NRTPVTGDVS IVAVSVLFAT FYVAFLVIFP GVRKQKFTTF  60
   61 STVTLSLFVG LVILITRLGS AWHVAHATII APYKAFSREK LPARIGTHIG LMHVNVTLTA 120
  121 IPIGNWTPPD IDYNERFTWE GANDMSANYR HALQRGLPFP ILTVAEYFSL GREGFSWGGQ 180
  181 YRAAGYFASI MLWASLASWL LMNLLLIAVP RYGAYMKALT GALLVCTTVG YHCLLPKRPL 240
  241 SIHLEGGRLE FHFGWCYWLV LVAGILCFIA GVLISIIDLV WPHTFSTVLE VYYGTPYDRH 300
  301 VILEESSDVR YRKPRNSRSL EDPPGLGSRI LRRLSSKARD LQPGTAPRRD SPAGVSSSGG 360
  361 VENKGFQSDA PKSPWRYPFR RSQQMAQQQH SHPLHQHPLQ QHHQHHQHHH QQQLQFVGGP 420
  421 VVQHPMHHMQ RTMSQDSGSS IASAAVQISP LHKHALARML PNPPVERIRD MDHW

Type	Start	End	Confidence
Cytoplasmic	1	28	0.62
Transmembrane Helix	29	49	0.93
Non-Cytoplasmic	50	56	0.55
Transmembrane Helix	57	81	0.80
Cytoplasmic	82	104	0.60
Transmembrane Helix	105	124	0.63
Non-Cytoplasmic	125	151	0.68
Transmembrane Helix	152	170	0.48
Cytoplasmic	171	183	0.65
Transmembrane Helix	184	207	0.87
Non-Cytoplasmic	208	213	0.63
Transmembrane Helix	214	235	0.90
Cytoplasmic	236	254	0.75
Transmembrane Helix	255	277	0.95
Non-Cytoplasmic	278	474	0.78