YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG15279-PA, CG15...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.96
Transmembrane Helix	56	76	0.87
Non-Cytoplasmic	77	84	0.77
Transmembrane Helix	85	105	0.90
Cytoplasmic	106	135	0.89
Transmembrane Helix	136	158	0.87
Non-Cytoplasmic	159	237	0.97
Transmembrane Helix	238	255	0.94
Cytoplasmic	256	266	0.76
Transmembrane Helix	267	287	0.94
Non-Cytoplasmic	288	309	0.93
Transmembrane Helix	310	332	0.89
Cytoplasmic	333	348	0.82
Transmembrane Helix	349	372	0.86
Non-Cytoplasmic	373	410	0.93
Transmembrane Helix	411	433	0.86
Cytoplasmic	434	442	0.88
Transmembrane Helix	443	465	0.88
Non-Cytoplasmic	466	476	0.80
Transmembrane Helix	477	499	0.91
Cytoplasmic	500	517	0.94
Transmembrane Helix	518	541	0.91
Non-Cytoplasmic	542	559	0.90
Transmembrane Helix	560	581	0.92
Cytoplasmic	582	639	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTQRNHQN LAFVGDDGRS TASTVEISTN SPALRDNSDD QEAAKVPEER ATWGKGVEFL  60
   61 MSCIAMSVGL GNVWRFPFTA LDNGGGAFLI PYLIVLFLIG KPIYYLEMVI GQFSSRGSVK 120
  121 VFDLCPAMKG VGAGQAFQVF MLSTYYAALV AIIGRYFIES FRNPLPWSTC RAEWGIHCIN 180
  181 SAPDASNWSQ LESNDQRPQN YTMKSQNDRV ITSSEWYFVK EVLHEKPNIE EGIGLPNWEL 240
  241 VIGLFIAWSC VFFIIRRGVK SSGKASYFLA LFPYVIMGVL LVRAVTLPGS IDGIYYFIKP 300
  301 QWGKILDPKV WYAAVTQCFY SLSVCFGNII MYSSFNKFGH NVHRDAAIVT GLDTMTSLLA 360
  361 GFTIFGILGH LAHEIGTDDI GSVVKGGAGL AFISYPDAIA KFKNLPQIFS VLFFLMLFVL 420
  421 GIGSNIAMTS CSVTAIRDRF PNFGQWQCSL LIAVVSFFIG LMYITPGGQY MLTLVDFFGA 480
  481 SMIALVLGIA ELYTIGWIYG TDRLCKDIEF MLGRKVGLYW RLCWSIITPL IMTVILIYFY 540
  541 ATYQPLTYNN IVYPNWSYSI GWLITAFGIL QLPIWMIVAI VRDPGQTLGA KIRGAFTPKK 600
  601 NWGPSDPLLR EQYHKEIENE LTPKRGQGIW AAIKQNIFG