YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7287824, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASDKRTVK MSDASIKPRK LKKHLRAADV KPRGMMTKSL LLHLCVYLVC ITQTLQLQQR  60
   61 QQQQQQQHRQ QQHGQPEGNM LQQHHRTSVN SSVNINISRQ FNEIIQTATA SASASGTGSA 120
  121 SGAVTFASVT AATTITPGRR KLRRKFQGQQ NRNSTLGRRR KLRLHPYHRR NATHATRTTT 180
  181 VASVSATATT LLPKMPHKQP FNYHTHLHSS FQQQQQQQHV AGGQVTQQQQ QQQQVHVVAV 240
  241 TPRPQQRQQQ PGFAIVPATY YHQQQQQQQR TLLGNLTQQQ QQQQQHLLIQ PGQNILVYSN 300
  301 LGPIPPCPPG LLSGSGMPVY TQQQHFIPLR STTTPRPRQR AAMRIESQPN WSKQLTSILH 360
  361 FGEELLGVPD PGRHGPKPAR IWHYVYRTHT LHHNEQPVVA AFRPFLVIEV FHTATQTFST 420
  421 KRMKTASESH TVINIKPCAD DKHKNETKIN WLVSSSKY

Type	Start	End	Confidence
Cytoplasmic	1	38	0.86
Transmembrane Helix	39	57	0.84
Non-Cytoplasmic	58	458	0.96