YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28380360, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNAQLKLTE VDDDELWLAV RLAHCSSNIS SSSSTRTTSS NKRHNQQLTT LQPRSLSTKH  60
   61 HSNIASEQHN SQQQEPASKD EDVANHGRSN DQQTHLQQLD SSNMLSPKTA AAATAAGDEA 120
  121 TTQQPTNIRL CARKRQRLRR RRKRKPATPN ETDIKKQQQL SMPPFKTRKS TDTYSTPAAI 180
  181 TSCPTATYMQ CRASDNEFSI PISRHDRVST ATFAWVLHVL QVLLVSLQQW QLHVQQRSVL 240
  241 LFRRIAASTI AFISYLGSFA AQLRSSSSSS SNSSNSGNSS STQILNGLNK HSWIFLLIYL 300
  301 NLSDEKNQLL VTNVWLKLEW NDMNLRWNTS DYGGVKDLRI PPHRIWKPDV LMYNSADEGF 360
  361 DGTYQTNVVV RNNGSCLYVP PGIFKSTCKI DITWFPFDDQ RCEMKFGSWT YDGFQVWFSV 420
  421 PGKRNEIYYN CCPEPYIDIT FAIIIRRRTL YYFFNLIIPC VLIASMALLG FTLPPDSGEK 480
  481 LSLGTYFNCI MFMVASSVVS TILILNYHHR NADTHEMSEW LRKDDECNDI ANDWKFAAMV 540
  541 VDRLCLIIFT MFTILATIAV LLSAPHIIVS

Type	Start	End	Confidence
Cytoplasmic	1	210	0.71
Transmembrane Helix	211	230	0.73
Non-Cytoplasmic	231	239	0.73
Transmembrane Helix	240	261	0.86
Cytoplasmic	262	450	0.91
Transmembrane Helix	451	473	0.92
Non-Cytoplasmic	474	483	0.84
Transmembrane Helix	484	507	0.89
Cytoplasmic	508	543	0.91
Transmembrane Helix	544	568	0.89
Non-Cytoplasmic	569	570	0.84