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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28574470, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNLIVLLLK RNQIMKISAG ALKNLTALKV LELDDNLISS LPEGLSKLSQ LQELSITSNR  60
   61 LRWINDTELP RSMQMLDMRA NPLSTISPGA FRGMSKLRKL ILSDVRTLRS FPELEACHAL 120
  121 EILKLDRAGI QEVPANLCRQ TPRLKSLELK TNSLKRIPNL SSCRDLRLLD LSSNQIEKIQ 180
  181 GKPFNGLKQL NDLLLSYNRI KALPQDAFQG IPKLQLLDLE GNEISYIHKE AFSGFTALED 240
  241 LNLGNNIFPE LPESGLRALL HLKTFNNPKL REFPPPDTFP RIQTLILSYA YHCCAFLPLV 300
  301 AMSSQKKTSQ VQEAVLFPSD AEFDMTLWNN SMMNIWPQMH NLSKQLGASM HDPWETAINF 360
  361 NEEQLQTQTG GQIATSYMEE YFEEHDVSGP ATGYGFGTGL FSGMSTEDFQ PGSVQCLPMP 420
  421 GPFLPCADLF DWWTLRCGVW VVFLLSLLGN GTVVFVLLCS RSKMDVPRFL VCNLAAADFF 480
  481 MGIYLGILAI VDAATLGEFR MFAIPWQMSV LCQLSGFLAV LSSELSVYTL AVITLERNYA 540
  541 ITHAIHLNKR LSLKQAGYIM SVGWVFALIM ALMPLVGVSD YRKFAVCLPF ETTTGPASLT 600
  601 YVISLMFING CAFLTLMGCY LKMYWAIRGS QAWNTNDSRI AKRMALLVFT DFLCWSPIAF 660
  661 FSITAIFGLQ LISLEQAKIF TVFVLPLNSC CNPFLYAIMT KQFKKDCVTL CKHFEESRVV 720
  721 GGGGPGGRGA VARTKRGDLP PPLLPAAAVA HPPGCRCLRM LPSEMPNWHK MEQTPSMWQR 780
  781 LRTFCCGENR RRRKQRRQPQ QRRQRAYTAA AANPYQYQFA ELRQQRQNRA SSISSENFCS 840
  841 SRSSSWRHGP PSSAPVPPGN CSMPLKMLEP HAHPHGHGRR RHSAWLITRK TSQDSNLSSS 900
  901 RNDSSASATT ASTSTFRLSR SSAGSSTPLP SIIAHNGKAQ LDAVKPRLVR QEAVQEEEDS 960
  961 SPPRLGVRFL PTIPSAADSS VVMEDGDSAN TGVASFLGMP LPGASSGFLI APTTAATTSP1020
 1021 PPVVLQPAKP PPDPNDAPL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle