YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	rk-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	33	0.99
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	758	0.98
Transmembrane Helix	759	780	0.94
Cytoplasmic	781	789	0.92
Transmembrane Helix	790	812	0.88
Non-Cytoplasmic	813	831	0.78
Transmembrane Helix	832	856	0.83
Cytoplasmic	857	876	0.93
Transmembrane Helix	877	897	0.94
Non-Cytoplasmic	898	919	0.92
Transmembrane Helix	920	945	0.86
Cytoplasmic	946	966	0.93
Transmembrane Helix	967	990	0.89
Non-Cytoplasmic	991	1360	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARCRWSWR LALCPLLLQL LLQLLLLPPS AMGHDETKEN PAPDMQNSQE QEPYVHLQHL  60
   61 QQQQQQNPQT VQQLSQITVN RTSKSASVTP TGIRENVMLP SADPEKEAQI LYEKSLQEYH 120
  121 GSQLSTASTA TDVIAGKRTL HSICERWLQK HCHCTGSLEV LRLSCRGIGI LAVPVNLPNE 180
  181 VVVLDLGNNN LTKLEANSFF MAPNLEELTL SDNSIINMDP NAFYGLAKLK RLSLQNCGLK 240
  241 SLPPQSFQGL AQLTSLQLNG NALVSLDGDC LGHLQKLRTL RLEGNLFYRI PTNALAGLRT 300
  301 LEALNLGSNL LTIINDEDFP RMPNLIVLLL KRNQIMKISA GALKNLTALK VLELDDNLIS 360
  361 SLPEGLSKLS QLQELSITSN RLRWINDTEL PRSMQMLDMR ANPLSTISPG AFRGMSKLRK 420
  421 LILSDVRTLR SFPELEACHA LEILKLDRAG IQEVPANLCR QTPRLKSLEL KTNSLKRIPN 480
  481 LSSCRDLRLL DLSSNQIEKI QGKPFNGLKQ LNDLLLSYNR IKALPQDAFQ GIPKLQLLDL 540
  541 EGNEISYIHK EAFSGFTALE DLNLGNNIFP ELPESGLRAL LHLKTFNNPK LREFPPPDTF 600
  601 PRIQTLILSY AYHCCAFLPL VAMSSQKKTS QVQEAVLFPS DAEFDMTLWN NSMMNIWPQM 660
  661 HNLSKQLGAS MHDPWETAIN FNEEQLQTQT GGQIATSYME EYFEEHDVSG PATGYGFGTG 720
  721 LFSGMSTEDF QPGSVQCLPM PGPFLPCADL FDWWTLRCGV WVVFLLSLLG NGTVVFVLLC 780
  781 SRSKMDVPRF LVCNLAAADF FMGIYLGILA IVDAATLGEF RMFAIPWQMS VLCQLSGFLA 840
  841 VLSSELSVYT LAVITLERNY AITHAIHLNK RLSLKQAGYI MSVGWVFALI MALMPLVGVS 900
  901 DYRKFAVCLP FETTTGPASL TYVISLMFIN GCAFLTLMGC YLKMYWAIRG SQAWNTNDSR 960
  961 IAKRMALLVF TDFLCWSPIA FFSITAIFGL QLISLEQAKI FTVFVLPLNS CCNPFLYAIM1020
 1021 TKQFKKDCVT LCKHFEESRV VGGGGPGGRG AVARTKRGDL PPPLLPAAAV AHPPGCRCLR1080
 1081 MLPSEMPNWH KMEQTPSMWQ RLRTFCCGEN RRRRKQRRQP QQRRQRAYTA AAANPYQYQF1140
 1141 AELRQQRQNR ASSISSENFC SSRSSSWRHG PPSSAPVPPG NCSMPLKMLE PHAHPHGHGR1200
 1201 RRHSAWLITR KTSQDSNLSS SRNDSSASAT TASTSTFRLS RSSAGSSTPL PSIIAHNGKA1260
 1261 QLDAVKPRLV RQEAVQEEED SSPPRLGVRF LPTIPSAADS SVVMEDGDSA NTGVASFLGM1320
 1321 PLPGASSGFL IAPTTAATTS PPPVVLQPAK PPPDPNDAPL