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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: nimC1-PA
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.59
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHIQCLWVC LGFFMLLVDF IQPIGLNVCN RSQVVTYKRY VERSRVIPYQ HRSFWSGWQT  60
   61 KYRTEYYTDE ETAYRTVMRP SCCEGYEGSV ENCKPVCRQQ CPQHGFCSSP NTCSCNAGYG 120
  121 GIDCHPVCPT VCGKNEFCDR PGVCSCQNGY KRTSPSDNCL PVCEKECGHH SFCSEPGKCE 180
  181 CEPGYEKVGN GTVFPDGYKN NSNGNCSPIC PKDCGQNSRC VRPGVCECEN GYAGDDGGTN 240
  241 CRPVCSTCPE NGLCLSPGVC VCKPGYVMRN DLCQPHCEKC SDNAHCVAPN QCECFPGYES 300
  301 SGADKKCVPK CSKGCTNGFC FAPETCVCSI GYQMGPNQVC EPKCSLNCVH GKCTSPETCT 360
  361 CDPGYRFKDN SHHECDPICD SGCSNGHCVA PNFCICHDGY QLNSTNPVTS MCQPICKGCQ 420
  421 FGDCVAPNVC ECNVGYENIN GLCELQTTTD SYEYSTTTVE LQSSTVDPQL QTSTSEVPHS 480
  481 NCTAGCMCWI EYDGMGTFNT AKCAKICVDP QDKPCLNLDN CQCDLSSGQL VCQEDSDMDY 540
  541 SGENSRYVCH ILPEQGARSE AEVRIPDRTG SSNKWMIIVG SCAGMIIGVA ATIIGIKYYR 600
  601 RSTSRRNFEA EEAIVECDFE 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle