YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0310252, TM9...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	25	0.95
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	266	0.99
Transmembrane Helix	267	290	0.90
Cytoplasmic	291	331	0.98
Transmembrane Helix	332	355	0.90
Non-Cytoplasmic	356	364	0.80
Transmembrane Helix	365	386	0.92
Cytoplasmic	387	400	0.90
Transmembrane Helix	401	423	0.91
Non-Cytoplasmic	424	437	0.82
Transmembrane Helix	438	460	0.89
Cytoplasmic	461	481	0.97
Transmembrane Helix	482	504	0.86
Non-Cytoplasmic	505	520	0.70
Transmembrane Helix	521	546	0.86
Cytoplasmic	547	554	0.93
Transmembrane Helix	555	577	0.91
Non-Cytoplasmic	578	598	0.84
Transmembrane Helix	599	621	0.91
Cytoplasmic	622	630	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSGALARPC LAIVLLAGVV LVADSFYVPG VAPVEFVQDQ KIDVKAVKMT SSRTQLPYQY  60
   61 YSLRFCYPKN GTLIFKSENL GEVLRGDRIV NTPYEVRMNQ QVNCRLLCNQ KDRPLTWSKE 120
  121 DSALVAERIQ HEYFVHLLVD NLPVATRIVS VNNPAEVTYE HGYRLGQVDG DNIYINNHLK 180
  181 FILSYHMHSK DKYRVVGFEV ETVSVSHKEL KFHGDTCNFP DSARPQLVNP NGETQLYFTY 240
  241 SVEWKESKVS WASRWDIYLG MRDVQIHWFS IINSLVVVFF LSGILTMIMI RTLRRDIARY 300
  301 NTDDNIEDTL EETGWKLVHG DVFRPPKNTR LFSAIIGSGI QIFFMALITI FFAMLGMLSP 360
  361 SSRGALMTSG IFMYVFMGTI AGYYAARLYK TMKGREWKRA AFLTATLYPG IVFGTGFFLN 420
  421 FFIWDKSSSG AVPFTTMISL LLLWFGISVP LVYLGFYLGY RKQPYQHPVR TNMIPRQVPT 480
  481 QHWYMNAVLS TLMAGILPFG AVFIELFFVF TAIWQNQFYY LFGFLFLVFC ILVVSCAQIS 540
  541 IVMTYFQLCG EDYRWWWRSF VVSGGSAVYV LFYSIFYFFT KLEITEFIPT LLYLGYTGLM 600
  601 VLTFWLLTGS IGFFAAYVFI LRIYGAVKID