YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG9254-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.89
Transmembrane Helix	20	40	0.88
Non-Cytoplasmic	41	90	0.88
Transmembrane Helix	91	111	0.86
Cytoplasmic	112	120	0.78
Transmembrane Helix	121	143	0.90
Non-Cytoplasmic	144	151	0.66
Transmembrane Helix	152	173	0.89
Cytoplasmic	174	180	0.84
Transmembrane Helix	181	204	0.89
Non-Cytoplasmic	205	211	0.85
Transmembrane Helix	212	233	0.92
Cytoplasmic	234	264	0.90
Transmembrane Helix	265	284	0.92
Non-Cytoplasmic	285	314	0.89
Transmembrane Helix	315	336	0.84
Cytoplasmic	337	348	0.87
Transmembrane Helix	349	368	0.90
Non-Cytoplasmic	369	373	0.73
Transmembrane Helix	374	393	0.86
Cytoplasmic	394	403	0.73
Transmembrane Helix	404	427	0.86
Non-Cytoplasmic	428	440	0.71
Transmembrane Helix	441	461	0.94
Cytoplasmic	462	481	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADAKEQPEW GIKLSKFFVL PQRWILAIMG FFAIFNAYTM RICLSQAITV LVVKRNYTIF  60
   61 HTEAICEPDD QSDPSSTFEG GDYDWSQEKQ GLILASFYIG YIVTHLPGGI LADKFGGKWT 120
  121 LSLGIFFTAI FTLLTPVCIV YGGADALIVL RVLMGLGEGT TFPALSVLLA SWVPANERGM 180
  181 LGALVLGGGQ MGSIAGNIIS GYVLSSMDWP WVFYVFAIIA LVWFVVFTLV CFSSPFTHPY 240
  241 IKPEERAFLA QEVPPPDKNK PKTPFFAILT SIPMWALISA QIGHDWGFYI MVSYLPKYMS 300
  301 DVLRFSIKSN GLYSSLPYVT MWIMSLLSGC VADQMIKRNC MSTTNTRKIM TGVAAFGPAV 360
  361 FMVAASYAGC NRGMVVALFT ITMGLMGTYY AGMKLTPLDM SPNYAGTLMA ITNGIGAITG 420
  421 VVSPYLVGVM TPNATLLEWR LVFWVAFGVL VVTAIVYCIW ASGDVQPFND GTNSNKKKDA 480
  481 A