YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG5287-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.80
Transmembrane Helix	5	24	0.79
Cytoplasmic	25	52	0.96
Transmembrane Helix	53	74	0.94
Non-Cytoplasmic	75	96	0.95
Transmembrane Helix	97	116	0.93
Cytoplasmic	117	127	0.77
Transmembrane Helix	128	146	0.94
Non-Cytoplasmic	147	166	0.88
Transmembrane Helix	167	190	0.86
Cytoplasmic	191	196	0.81
Transmembrane Helix	197	218	0.88
Non-Cytoplasmic	219	224	0.82
Transmembrane Helix	225	244	0.94
Cytoplasmic	245	252	0.84
Transmembrane Helix	253	274	0.87
Non-Cytoplasmic	275	280	0.68
Transmembrane Helix	281	300	0.65
Cytoplasmic	301	354	0.68
Transmembrane Helix	355	375	0.52
Non-Cytoplasmic	376	382	0.55
Transmembrane Helix	383	402	0.80
Cytoplasmic	403	409	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVAIAINA AISGAAYCMT VRMIPRFREM FIKANLFGND LCKKDKPQVP ESFGVLIGCV  60
   61 FLVSLFLFIP IPFAFDEAAA TDAITGGKPD TFPHDKFVEL IAALLSICCM IFLGFADDVL 120
  121 DLRWRHKLLL PTIATLPLLM VYYVNYNSTT VIMPNFARNL IGTSLNIGAL YYVFMGMLAV 180
  181 FCTNAINILA GINGLEVGQS FIIAGSILVF NAIELLLGHQ VDSHIFSIYF MLPFLATTLA 240
  241 LWKFNKYPSQ VFVGDTYCYF AGMTFAVVGI LGHFSKTLLL FFLPQILNFL YSTPQLFHFV 300
  301 PCPRHRLPKY DSKTDLLHIS TTEFRLEDLN APGRLMVTVL RNLRLISWHT KADGVVRTNN 360
  361 FTLINFVLVV FGPVHERVVT QMLMGFQVLC TLIALTIRYP LANYFYAKT