YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG12404-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQFGGPNDF YGSAPSADAS YNFDMPEFGQ ELNFQTFDNT QASVPPNYDA SYAQPPSQGL  60
   61 GGFYDPTAYT DTSYGQDKSG KSAAGGGAGN EFDDEPPLLE ELGINPNHIF QKTLAVLNPL 120
  121 RGTDQQILQD TDMAGPLVFC LTLGGFLLLS GKVTFSYIYG IGVMGCIFFY CLLSLMVSRS 180
  181 QVTFGAVASV LGYCLLPMVV LSGINILITI QGTLGLIVSG ISIFWCAISA SKLFATAFSM 240
  241 DHQQLLIAYP CAVLYGGFAL ITIY

Type	Start	End	Confidence
Cytoplasmic	1	130	0.84
Transmembrane Helix	131	149	0.80
Non-Cytoplasmic	150	154	0.65
Transmembrane Helix	155	177	0.87
Cytoplasmic	178	183	0.68
Transmembrane Helix	184	208	0.84
Non-Cytoplasmic	209	212	0.51
Transmembrane Helix	213	235	0.85
Cytoplasmic	236	244	0.73
Transmembrane Helix	245	263	0.92
Non-Cytoplasmic	264	264	0.81