YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	spict-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.94
Transmembrane Helix	45	65	0.96
Cytoplasmic	66	85	0.87
Transmembrane Helix	86	107	0.75
Non-Cytoplasmic	108	111	0.50
Transmembrane Helix	112	135	0.84
Cytoplasmic	136	144	0.77
Transmembrane Helix	145	165	0.93
Non-Cytoplasmic	166	184	0.91
Transmembrane Helix	185	205	0.96
Cytoplasmic	206	212	0.88
Transmembrane Helix	213	236	0.91
Non-Cytoplasmic	237	250	0.83
Transmembrane Helix	251	272	0.89
Cytoplasmic	273	283	0.80
Transmembrane Helix	284	304	0.92
Non-Cytoplasmic	305	314	0.83
Transmembrane Helix	315	335	0.91
Cytoplasmic	336	385	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSDGEASSL QMPQVTVGGM LPVEANQSPE TAPLSMAETV SNTDFYIGVG LAISSCFFIG  60
   61 SSFIIKKKAL IRLSRYGEVR ASAGGFGYLR EWIWWAGLLT MGVGEAANFA AYAFAPASLV 120
  121 TPLGALSVII SAVMASRFLN EKLNLLGKIG CFLCILGSTI IVIHSPKEKE IEDLQLLFDM 180
  181 LLDPVFILYV ICIVGSTVFV ACFIAPRHGH TNVVVYIFLC SGIGSLTVMS CKALGLAIRQ 240
  241 TLNNGGNVFL TWMPWFLILV TVTFIAIQMN YLNKALDIFN TSIVTPVYYV MFTTLVIAAS 300
  301 AILFKEFTHM RFDDILGDVC GFLIVITAVF LLNAFRDIDI SLNDVRGLMR PKMQRVSQFD 360
  361 EEVLVTSNTK ERRLSYGSSD IFRKA