YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Oatp33Eb-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.93
Transmembrane Helix	46	63	0.81
Non-Cytoplasmic	64	83	0.73
Transmembrane Helix	84	106	0.92
Cytoplasmic	107	114	0.73
Transmembrane Helix	115	136	0.90
Non-Cytoplasmic	137	173	0.72
Transmembrane Helix	174	197	0.87
Cytoplasmic	198	211	0.59
Transmembrane Helix	212	233	0.58
Non-Cytoplasmic	234	241	0.72
Transmembrane Helix	242	263	0.93
Cytoplasmic	264	312	0.96
Transmembrane Helix	313	333	0.91
Non-Cytoplasmic	334	363	0.93
Transmembrane Helix	364	383	0.92
Cytoplasmic	384	391	0.87
Transmembrane Helix	392	413	0.87
Non-Cytoplasmic	414	508	0.96
Transmembrane Helix	509	533	0.85
Cytoplasmic	534	544	0.86
Transmembrane Helix	545	563	0.90
Non-Cytoplasmic	564	597	0.87
Transmembrane Helix	598	617	0.82
Cytoplasmic	618	814	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHNTRNSDL SQIAVNANNI PDDSVDCGIK GLGWCRGPGC QKYARLRTFI LVLAISGTLQ  60
   61 GACESYFRVS AKQASFQFGW NPLIVDWLLV ASGLFQAVFA LAFAYWADVY HPIKWLVGTL 120
  121 MLQAVTCVVA VIPSIMNFAD GNQAKDALLD ANMCATSLAQ FQRLTLTEAQ SSSLTLAMLF 180
  181 VLQLALGMGG LAYYTLGVSY IDDNSLSQDS PAVIGAALAA RVFGQQAGSF LVLGVGLTHV 240
  241 GWWLGWVILA PFIFVGAVLL GLFPKRLPKT VIHQAAQRII EQSSMRRFGS QFSTYMDDSD 300
  301 FWPSLKRLFN NRLLMFNLLS IMCVQSAVVN YGLQEESYLQ SRFFLPYNEQ DGLAAEWRSA 360
  361 FVSYFLKPPV MALGMLISGL VISKAKLSAR KITGINIALS IHLVAIFIGL IFVQCDVGAI 420
  421 AGVEGGKLKQ PYCSSQCLCT PTAFMPVCPE NSSVTYFSPC YAGCTKKTTI NSFQLFEGCS 480
  481 CSGDQSLNST GQMRATAGAC SSDNCQSAII IFQIMSISVA FLMGVGAIGK TLITLRAVLP 540
  541 QDKSLALAFE LMIVGLFAYV PVHLSYDIVT RTTCVYWAPN YERCLLRETP KHGNILDILT 600
  601 ASLILASVLF DILVYIFAKG LNLYNCKVTD NNYTPSLYAP IPHEDATTSP SAPRGGSPVT 660
  661 TTTTSSPIQR RDAAPEPRTE TAVFRNPSSV TTSSGGAQSI VEPSESGVTY AQVVFPPDRR 720
  721 KPDDGSTSPK RLAVPANVPL HLLSESDVRS QLGNLKSFNP PKQEADRGLD TVDTDDVVVT 780
  781 QPQVQAVLPI TRDLHPNHQP QPESPRPQSP ETDF