YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	l(2)01810-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.87
Transmembrane Helix	16	37	0.85
Non-Cytoplasmic	38	83	0.87
Transmembrane Helix	84	106	0.80
Cytoplasmic	107	113	0.83
Transmembrane Helix	114	134	0.95
Non-Cytoplasmic	135	146	0.79
Transmembrane Helix	147	168	0.90
Cytoplasmic	169	176	0.85
Transmembrane Helix	177	199	0.92
Non-Cytoplasmic	200	205	0.88
Transmembrane Helix	206	227	0.94
Cytoplasmic	228	261	0.95
Transmembrane Helix	262	281	0.84
Non-Cytoplasmic	282	311	0.84
Transmembrane Helix	312	333	0.88
Cytoplasmic	334	345	0.82
Transmembrane Helix	346	365	0.90
Non-Cytoplasmic	366	369	0.78
Transmembrane Helix	370	390	0.91
Cytoplasmic	391	400	0.81
Transmembrane Helix	401	424	0.87
Non-Cytoplasmic	425	437	0.78
Transmembrane Helix	438	458	0.95
Cytoplasmic	459	496	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQQPQWGIS LSRYFVIPQR VILAIMGFLA ILNAYTMRVC LSQAITVLVV KKNSTDDDSE  60
   61 AICEPDDIDE GTSVGGDFEW SEELQGLILS SFYIGYIVTH IPGGLLAEKF GGKWTLGLGI 120
  121 LSTAVFTMLT PLAINKGDSD WLIVTRVLMG LGEGTTFPAL SVLLAAWVPA NERGKLGALV 180
  181 LGGGQVGTIM GNLLSGVFID AYGWEFVFYF FGGLGVVWFA IFMFLCYSDP TSHPFIKPSE 240
  241 REYLVKEIGT ISRNEDLPPT PWKAILTNLP MFALVAAQIG HDWGFYIMVT DLPKYMADVL 300
  301 QFSIKANGLY SSLPYVMMWI VSVGSGFVAD WMIRRGVLST TNTRKVMTGL AAFGPAIFMV 360
  361 GASYAGCDRV LVVVLFTICM GLMGAYYAGM KLSPLDMSPN YAGTLMAITN GIGAITGVIT 420
  421 PYLVGVMTPN ASLLEWRLVF WVAFGVLCFT AVIYCIWASG EVQPFNNAPI QPRSVDFEAQ 480
  481 ERKVGGEKTS GLEQSS