YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Or33c-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIIDSLSFY RPFWICMRLL VPTFFKDSSR PVQLYVVLLH ILVTLWFPLH LLLHLLLLPS  60
   61 TAEFFKNLTM SLTCVACSLK HVAHLYHLPQ IVEIESLIEQ LDTFIASEQE HRYYRDHVHC 120
  121 HARRFTRCLY ISFGMIYALF LFGVFVQVIS GNWELLYPAY FPFDLESNRF LGAVALGYQV 180
  181 FSMLVEGFQG LGNDTYTPLT LCLLAGHVHL WSIRMGQLGY FDDETVVNHQ RLLDYIEQHK 240
  241 LLVRFHNLVS RTISEVQLVQ LGGCGATLCI IVSYMLFFVG DTISLVYYLV FFGVVCVQLF 300
  301 PSCYFASEVA EELERLPYAI FSSRWYDQSR DHRFDLLIFT QLTLGNRGWI IKAGGLIELN 360
  361 LNAFFATLKM AYSLFAVVVR AKGI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.73
Transmembrane Helix	7	25	0.45
Non-Cytoplasmic	26	33	0.52
Transmembrane Helix	34	58	0.83
Cytoplasmic	59	128	0.81
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	191	0.73
Transmembrane Helix	192	211	0.69
Cytoplasmic	212	257	0.78
Transmembrane Helix	258	278	0.94
Non-Cytoplasmic	279	284	0.69
Transmembrane Helix	285	306	0.90
Cytoplasmic	307	384	0.61