YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG17108-PA
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLFIVLSVC VALASAGGYG GGGGGGGGGH AGASASSSAS AGAIGGGDGG GKLGGGYGSG  60
   61 GHGSGGLGSG GFGSGGDLGL GGGGVGGGPF AGGHAGGGVI SGGGHSGGGG GFGGGPGFGS 120
  121 GGHSGGGIGD GPGFGSGGYS GGGGGIGGGG GHSGGGSGIG GGPGFGGGIG GGGGHSGGGG 180
  181 GIGGGPGFGG GIGGSGSSAS SSVGVIGGGH GGGGHGGGGF GPGGGGGGGF GPGGGGFGPG 240
  241 IGGGGGGFGP GIGGGSGGGH FGGGLSHKHK GHGGGGGFKG GYGGGGGGGG GGGGGYGIGP 300
  301 AVSLGGGPGG GGSYGGGYGG GSGASASASA SASAGAGGGY HG

Type	Start	End	Confidence
Cytoplasmic	1	4	0.60
Transmembrane Helix	5	23	0.62
Non-Cytoplasmic	24	64	0.60
Transmembrane Helix	65	88	0.65
Cytoplasmic	89	89	0.23
Transmembrane Helix	90	124	0.62
Non-Cytoplasmic	125	148	0.43
Transmembrane Helix	149	183	0.59
Cytoplasmic	184	184	0.27
Transmembrane Helix	185	219	0.66
Non-Cytoplasmic	220	239	0.64
Transmembrane Helix	240	263	0.83
Cytoplasmic	264	279	0.78
Transmembrane Helix	280	299	0.90
Non-Cytoplasmic	300	317	0.75
Transmembrane Helix	318	340	0.82
Cytoplasmic	341	342	0.80