YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22946056, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	331	0.66
Transmembrane Helix	332	356	0.85
Cytoplasmic	357	371	0.72
Transmembrane Helix	372	395	0.74
Non-Cytoplasmic	396	402	0.76
Transmembrane Helix	403	424	0.93
Cytoplasmic	425	433	0.79
Transmembrane Helix	434	454	0.89
Non-Cytoplasmic	455	459	0.84
Transmembrane Helix	460	482	0.88
Cytoplasmic	483	727	0.96
Transmembrane Helix	728	749	0.91
Non-Cytoplasmic	750	764	0.79
Transmembrane Helix	765	786	0.87
Cytoplasmic	787	800	0.74
Transmembrane Helix	801	821	0.86
Non-Cytoplasmic	822	828	0.80
Transmembrane Helix	829	853	0.87
Cytoplasmic	854	860	0.85
Transmembrane Helix	861	881	0.91
Non-Cytoplasmic	882	888	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQPTTCSKQ QQQRQQPAIA TAAVGGAAVQ ELLRKAAAKD HGALAAATAT ATAASTTATT  60
   61 ATAATASRNS SNTWCHSDDM LSAGRSRSSS TTIDFNSRRR RGRLRGHAPS DLAMNKQHQA 120
  121 TILDECVNIF KRLVLLTLKT ISATTITKAK TRSRTAAQLP ATSAASATSS RGASAEQLLH 180
  181 PSSRSRCRSR RCLRLPIYSI LLLCLTTQGL GLGDAAKPRP AKQHFGGSNS NSPNQNQNHN 240
  241 DVLGGVGAPS QTSGEDEAEI MYPFQSGEQM FGLEEDQEQD PELNSNAVPG SDEDNAGNQR 300
  301 GINDTHNDNS TTTKTPLFPK DLFTKEQLEN GAVILHIIGV IYMFVALAIV CDEFFVPSLD 360
  361 VIIEKLGITD DVAGATFMAA GGSAPELFTS VIGVFVSFDD VGIGTIVGSA VFNILFVIGM 420
  421 CALFSKTVLS LTWWPLFRDC SFYSISLLVL IYFFRDNRIF WWEALILFTI YIGYVAFMKW 480
  481 NVQVETCVKK MITKNKVTRV RSTDQLMPAG NAANSSETSM ATQPGGSVTS RAASETRSGP 540
  541 PGSSNAGATG NSSGGGGTSG STQTGAKFRH GLLQLMIHTI DPLHDGKFVE LPQCVLHKSS 600
  601 QMPKNKNAKN QKKKKNECKV DEKATQLHAI ASLKVLLDAT KPQRGGATTS AANHVKINLK 660
  661 ETTLADRPNG NIDTTLDSAP EIEDEPEPLS MAWPDTARKR LTYVLVAPLL VPMWLTLPDT 720
  721 RTPRGKRFFP VTFIGSIVWI AAFSYLMVWW ANVAGDTARI PPEVMGLTFL AAGTSIPDLI 780
  781 TSVIVARKGF GDMAVSSSVG SNIFDVTVGL PIPWLLYGII YGAPVEVNSV GMVCSITILF 840
  841 MMLVFVVMSI ACFRWRMNKG LGFTMFLLYF AFVAVSLMFE YDVITCPF