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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Oatp30B-PA, Oatp...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKHIEQYT NPSFEQESDQ PPDPLGGVAD VGAGNASSSS NGHIANDAGT ANRKGHRRQE  60
   61 SMYQMTGLYS ETNSGDDSSI DAALDHDSQP HATSYLAGDQ LPSTVGSGPG GGGPSAVADS 120
  121 VTVKCHSRQA SAGKCPADPE EDFDEEQFRS GDCGILNCRP YGIQRFARIK IFVVLLSLLV 180
  181 MMQQALSSGY INSVITTIEK RFEIPSSYSG LIASSYEIGN VITVIFVSYL GSRRHIPVWI 240
  241 GIGAVIMGIG SLVFMVPHFT GEPNPGIAIV NKTSDNICKS ALVRDQDMDL GRLSSGLSNQ 300
  301 PLAPHTLRED NCLEGKASTT GPVLLFVLAQ LLLGCGGSPL FTLGTTYVDD HVRTESSSMY 360
  361 IGFMYSMGAF GPVVGFLLGA YLLSFHMDSL SSTTISITPG DRRWVGMWWG GFLLCGVILL 420
  421 VVAVPFFSFP KVLAREKKKI RKSSVVQPVL PNNSRATVAT DEMGKVKKLE IVAVTSKEDQ 480
  481 SQAPPKVDTG YGKDIKDIPQ SMLRLVKNPV YIVTCLGACM ELMIVSGFVV FLPKYLETQF 540
  541 SLGKSQANIF TGSIAVPGAC IGIFLGGCIL KRFQLKPKGA VQFVLITNVI CLACYAMLFF 600
  601 LGCDNLKMAG TTIPYYTSNK HGSTLEQPFQ VNLTAACNFG CECLTSEVEP VCGNNGLTYF 660
  661 SPCHAGCTAF SSTSNTNYTN CACVRANISS SIYRGAGGSQ AQALSANENF AEVTVVPVAT 720
  721 AGPCATPCRT IYPFLILLFF MTFLVASTQM PLLMIVLRSV SEEERSFALG MQFVIFRLFG 780
  781 YIPAPILFGN LIDSTCILWK SSCGEKGGRC LIYDIEKFRY KYVGLCASVK LIALVIFMVD 840
  841 WWLVRRRKQL EKMKPLNASD PIIGSIISLD KLFEEKLSGA EPSTAFVGGG GELIIPTDIL 900
  901 RHSRNDSRTM HMDYCYDKCG RVVTPANTCN QPQTKSKKHF RSASCDVKMI KSFARDHSSS 960
  961 SGPADAAGQD AVGASTKYKN LKKFQAHTRN HSTDLHDPSQ PIRYIQNQLR PQDCPEEDDD1020
 1021 EELTTGCGHF VKKHSRNHSY DQIYMPNNIR FDADFLRHPH SHHNPKKNVN VLKNVVSDVG1080
 1081 KLKNSNEIEA GGAGSRGHSR NNSKDLNTKI SSATPASGQV VTDASTTGLS VLRHRRTNSK1140
 1141 DLNYQVLPES AASSSVSGHA HPQHTRNTSH HKIQIDDDRN ELINDNDDEE EERSACA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle