YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220960092
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.66
Transmembrane Helix	8	25	0.47
Non-Cytoplasmic	26	83	0.72
Transmembrane Helix	84	104	0.88
Cytoplasmic	105	142	0.84
Transmembrane Helix	143	177	0.69
Non-Cytoplasmic	178	178	0.48
Transmembrane Helix	179	209	0.66
Cytoplasmic	210	217	0.77
Transmembrane Helix	218	239	0.93
Non-Cytoplasmic	240	274	0.70
Transmembrane Helix	275	296	0.87
Cytoplasmic	297	304	0.59
Transmembrane Helix	305	325	0.78
Non-Cytoplasmic	326	342	0.48
Transmembrane Helix	343	369	0.85
Cytoplasmic	370	375	0.47
Transmembrane Helix	376	400	0.82
Non-Cytoplasmic	401	426	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSKFFKLLL LGGAVRFYFC RTPLAPMIGN RVEFATPLNS HKRMQEGIFL LQSGIDPYLG  60
   61 DLVHESPLIL SALSGLFQKY PQFLPIFYII LDICTAALLY AMSLRFVKQK QDQQDKERKE 120
  121 YAKDTEELQF GPLDKLDIPE LVIVAYLFSP LTVMSCIGMT STVISNLFLA FFFYCLVKGM 180
  181 LIPCLLVLAF ETVRSFYPIV LIAPLLLVFS RNSVRRGVAI AALFIVSCLI VAVANYFVLN 240
  241 SWNFLDGTLG FIFYFRDLQP NIGLFWYFFT EMFEHFRTMF LITFQLNATV LYLVPLSIKL 300
  301 RKEPLLLATV LVALMAVFRA YPSLGDVGFY LALLPLWKRC WKFMAHGFVV FTFFLVTLSM 360
  361 MGALWHLWIY AGSANANFYF GATLAFSTGQ IFLITDLLFA HVKREFCLFN GQKILIDGEE 420
  421 ARIVLK