YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|542578, gi\|80...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.74
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIPFTRIFK VIFVLSTIVA VTDCCSSRIL LLREHTLKIV QHQHSHMHEH AHELQQQIQE  60
   61 TAVELLNRLE LQRKQLEASA QEEADQLHPD TDPNPDSGGQ LPNADDSIAA DPEQDGIILG 120
  121 SSTDTWLASE SSTPITDSET VTTPETVTHT GEPPPDPSSS STPDSTTPSP NDKETEIQML 180
  181 PCSEAYNTSF CLNGGHCFQH PMVNNTVFHS CLCVNDYDGE RCAYKSWNGD YIYSPPTAQR 240
  241 KVRMAHIVFS FPVLLMLSSL YVLFAAVFML RNVPDYRRKQ QQLHLHKQRF FVRC

Type	Start	End	Confidence
Signal Peptide	1	26	0.74
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	244	0.84
Transmembrane Helix	245	270	0.85
Cytoplasmic	271	294	0.81