YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG7840-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPENGILE VLENLLDRYK INLLQMMFGT FIATIVFFGG LMTFVEKYLP NSIRQSFRYG  60
   61 KHSFKGETDP LVAWLEVPKS WFKHFYTFAL FWSWLAFYVL VSTVREQKEA PEYVLQFLDI 120
  121 MGGGRSHRKV EIDSTTACVG AFMLTLQCTR RFYETNFVQI FSKKSKINLS HYAVGYVHYF 180
  181 GAVIALLSNT SGFVRGSKPM EFSLDKLTSQ QILYLGVFFL AWQQQYASNM ILVNLRKDPR 240
  241 TGSVKTEKHL LPKGGLFNLL SSPHMFLEVV MYFCIADLYM PVRIWRLIFL WVASNQTINA 300
  301 LLTHKWYQET FREYPKNRRA IIPFLL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.94
Transmembrane Helix	21	44	0.87
Non-Cytoplasmic	45	81	0.92
Transmembrane Helix	82	101	0.91
Cytoplasmic	102	171	0.80
Transmembrane Helix	172	194	0.77
Non-Cytoplasmic	195	211	0.61
Transmembrane Helix	212	233	0.53
Cytoplasmic	234	254	0.49
Transmembrane Helix	255	276	0.67
Non-Cytoplasmic	277	286	0.37
Transmembrane Helix	287	302	0.46
Cytoplasmic	303	326	0.74