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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|28574575, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.04
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPCKSAIIL DAQTSTTLKC EDDEPMSWWT SQSQYVHVKS FDNTEDPARP FGTSLHLIEV  60
   61 TADYVAAYYC VKTSKFSQIA KEEQSDEAMI ELVNQGYASS IYVYVNDPDT KLVDSHNVVT 120
  121 ARQYTDVVIP CKPAMPDTEV LLETSNGEST WKISSKGQIQ GNPKFFDSVR YHPRWGFTFR 180
  181 VIDCVSGYLY CKTLDYELII DVTYPEKDGK PLPKPVIRSS VEHHVFTDTN FTLDCEQSAY 240
  241 VESVYGMEWF TPSRDENRIF ASQSRTDPKT RNSTHQTGRS TLTVLNAQPS DTGLYKCVTT 300
  301 DNSNQNVQRA TYRIKVLKQN ESYLNVGEPS GHYNVQEYAN RTIQMTANFE GFPTPSFSWF 360
  361 KPDGTEVRQS ENNFKILSTE LSTMLQVLNA QLQDSGTYVL RGSNSFGVVQ REYNVSVMDA 420
  421 PALKMSDAYV QVGSVARLEC TVRSYPPAIV TFFFRPCSLE PQWPTCSVLN QNFSLPSEQE 480
  481 KYQFQTRPRP GKLSVERIYE VSFLPTEPGI LTCIAQNIID GKERRTLTKA HVLLGNISEN 540
  541 MTIYGFDKDH KIAKEDNVNF TCEALAYHFD GNLKWFINGE DLKESDSVHI ETSHTKYSYK 600
  601 STVHITTISD RDRGTYECRA YHNDKDAVYS SREIDLYVHD PSAPQWTNGG QEGHSKIKRK 660
  661 LSQTLELECA STAVPVAIVR WFKDDKEVTE SKLRHIIEKE SKLLITHLYP GDEGVYKCVV 720
  721 ENRLDRIERS FTVVISDLPG ISMAWVWFGV ILFLILIGLC VFLAVRYQKE HKRHLALKAA 780
  781 GLANFEEGAV GHINPDLTLD EQAELLPYNR EFEFPRENLK LGKQLGAGAF GVVLKGEAKG 840
  841 IRREEPTTTV AVKMVKATAD NEVVRALVSE LKIMVHLGQH LNVVNLLGAV TKNIAKRELM 900
  901 VIVEYCRFGN IQNFLLRNRK CFINQINPDT DHIDPSIMTQ RMSDNYELHR DTNGGGLKYA 960
  961 NVGFPIHSYI NEPHNNNTQP PTHRRNSDND PRSGTRAGRT GSGTATYSYD RQMDTCATVM1020
 1021 TTVPEDDQIM SNNSVQPAWR SNYKTDSTEA MTVTTVDLIS WAFQVARGMD YLSSKKVLHG1080
 1081 DLAARNILLC EDNVVKICDF GLARSMYRGD NYKKSENGKL PIKWLALESL SDHVFSTYSD1140
 1141 VWSYGIVLWE MFSLAKVPYP GIDPNQELFN KLNDGYRMEK PKFANQELYE IMLECWRKNP1200
 1201 ESRPLFAELE KRFANMLGED VASHYLDLNN PYMQSNIEYM KKQSTDYLAL MGSPDELAPA1260
 1261 APRYVNGHIV PDIRIEELPD DYMEMSRDSD PDACTAIFSP TRLEGESSDF PDFSSETTFN1320
 1321 FPGARQSPTL SNNLNSGSSK PLRKKNGMPT VDVADQAPEE IPMLHRSSTG SDGSPEQGRR1380
 1381 FNQALKQQYV TPTPSPRHHV ETKLNGEPSE NYVNMKPPRK NIPGKTTTGG GGAAAGASTE1440
 1441 AFSNPSYQPL STVNEKEQRR Y

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle