YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG8451-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.90
Transmembrane Helix	19	39	0.90
Cytoplasmic	40	79	0.99
Transmembrane Helix	80	102	0.88
Non-Cytoplasmic	103	112	0.82
Transmembrane Helix	113	135	0.89
Cytoplasmic	136	157	0.81
Transmembrane Helix	158	180	0.87
Non-Cytoplasmic	181	187	0.85
Transmembrane Helix	188	208	0.93
Cytoplasmic	209	217	0.79
Transmembrane Helix	218	239	0.90
Non-Cytoplasmic	240	267	0.91
Transmembrane Helix	268	287	0.93
Cytoplasmic	288	307	0.89
Transmembrane Helix	308	330	0.94
Non-Cytoplasmic	331	367	0.89
Transmembrane Helix	368	390	0.86
Cytoplasmic	391	410	0.92
Transmembrane Helix	411	432	0.92
Non-Cytoplasmic	433	436	0.86
Transmembrane Helix	437	459	0.89
Cytoplasmic	460	467	0.66
Transmembrane Helix	468	488	0.89
Non-Cytoplasmic	489	535	0.94
Transmembrane Helix	536	556	0.93
Cytoplasmic	557	600	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVAKKGME NYRFGSVDYA VFLGMIVLST STGIYFGCIK KSKVKLEEAE PTLPTTTPKR  60
   61 RKHDFGSEKM SEYLLGSRNL KVFPVAMSLI ASYISGVTIL GTTSEIYNYG TQYWFIAIAI 120
  121 MLQGIAVSYV YIPVFSALQV GSSYEYLEMR FHSVVRSIAS FMFILDEILF LPFIVYVPAI 180
  181 ALNQVSGINL HVIAVVIVVV CVFYTFVGGI KAVVHTDAWQ VLVMFLSVLA VAILATVYAN 240
  241 GLNVLFDDAA KGGRLIFNNT NPSPYVRHTV WSVLIGGFSY WTSFNAVNQT MVQRYMSLPS 300
  301 LKKARASMAI FTIGVAAFVS VCCYVGLLIY EMYKDCDPLS AGLITHDDQL LPLFVVQSVG 360
  361 HIYGMSGLFI AGIFGAALSS LSVVLNSTSL VILEDIVRGC FKMQPSERAS TILVKSTVIV 420
  421 LGFVALSLVF VLEQLSGILS ICTSMTAIAA GTTFGLFTLG MLVPWANTVG TAVGGIASAL 480
  481 LAGWISFGTQ FTIAAGELNS QKLPVSVEGC VGNVTLRENI WVDEEQVFPL YRLSYHWINP 540
  541 IGVATVIVVG ALVSLVTKPT NMKTLDPDLI SPVIHRFLPK ECFSGRNLHA QAHKNLLNVS 600
  601