YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22945942, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGGGGGVAG AGFSAGASGP MLGAGGHMLM GGQGHQVHLQ HQTLLPVKMD KLVPNYDNAE  60
   61 HQMKFYDIRS PLVLSCNVKD GTPGGVLIWK KNGTAVTDVP SLRGRFKLIA DENKFIIDKT 120
  121 DTNDDGKYSC EFDGVSKEIE VIARVVVRVP SNTAVVEGEK MSVTCSVVGT KPELTWTFAN 180
  181 VTLTNATDRF ILKPDDNGVP NAILTLDNVT LDDRGEYKCI GRNAANVYGG NTTTPASDVT 240
  241 TVRVKGKFAA LWPFLGICAE VLILCIIILI YEKRRNKSEL EESDTDPQEQ KKKRRNYD

Type	Start	End	Confidence
Cytoplasmic	1	7	0.28
Transmembrane Helix	8	30	0.57
Non-Cytoplasmic	31	248	0.60
Transmembrane Helix	249	271	0.91
Cytoplasmic	272	298	0.59