YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Herp-PB
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQAYAQYMQ QLTLRSTLPG SNQSGLPPPT QPLLPSVPLI AGRNFGEVQQ VAGAAAAPAA  60
   61 QVPADPQING APQNRNFPNI QEEPEMHDWL DSFFSFTRLA IFVTVLYFNS SALRCLLVVL 120
  121 IAGAIYLYHI GVLRRRRERN NNNINRNNNA GDAAAFAAVQ QIQRMMDAAV QRENNDPQAA 180
  181 NEPGAVPAAG PAAAGEQDAI DAPPAGAPVA PASAANPEPT DVSAEAVEPP NANNSVISVV 240
  241 RTFVITFFTS LLPEAPAL

Type	Start	End	Confidence
Cytoplasmic	1	88	0.62
Transmembrane Helix	89	108	0.44
Non-Cytoplasmic	109	111	0.44
Transmembrane Helix	112	132	0.87
Cytoplasmic	133	258	0.70