YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FBpp0310049, Herp-PA
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENAAPPAA ATAAGCDAAT RQKNPETSVR LLIKSSNQQY EDLNVDSDLC WTVQRLKKHL  60
   61 SLIYPGKPLI QDQKLIYSGK LLDDSQKISE VIRSYKDVYQ QHHIFHLVCA SKQVIRPAAK 120
  121 APTVPQKDAV PAGPEVTGNA NELRQRHAPH QQQAQQGNAG PHVTGDIGLA NPWTHFWQQS 180
  181 QGAAPAANAS ASPHALFQQQ ALIYNAWMQQ AYAQYMQQLT LRSTLPGSNQ SGLPPPTQPL 240
  241 LPSVPLIAGR NFGEVQQVAG AAAAPAAQVP ADPQINGAPQ NRNFPNIQEE PEMHDWLDSF 300
  301 FSFTRLAIFV TVLYFNSSAL RCLLVVLIAG AIYLYHIGVL RRRRERNNNN INRNNNAGDA 360
  361 AAFAAVQQIQ RMMDAAVQRE NNDPQAANEP GAVPAAGPAA AGEQDAIDAP PAGAPVAPAS 420
  421 AANPEPTDVS AEAVEPPNAN NSVISVVRTF VITFFTSLLP EAPAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	311	0.87
Transmembrane Helix	312	337	0.82
Cytoplasmic	338	465	0.86