YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG31904-PB, CG31...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGICGEQLN NCMLLGDCEN SEHGTELPGD FIGEPVETES GGGMGGSLAL AARRIRSRQV  60
   61 HSMAVRTGSA YDTLERPYRH DKCRGRWAKS ADFYFASCTH AFSSLIFSEL STFGILHGGW 120
  121 LLFIIAYLMG MLFYSLPIFL IQAFLGQFSS SGTISAFRVA PIFKGIGYAI LLLNLGTLTY 180
  181 YSIAAVVPLI YTVNSIHPVI PWMSCNNSWN TQECSLHENY DVDFAVAVIF TLALAMGVQS 240
  241 SVIPLLSQVA GHGLSYTAVS GPAVVASPWA VPAAHWPAAV NVASWPPAAI HAAAPAVLAA 300
  301 PAPAVVAAHA PSVVVAPVAH SGVYTAQTRG AIHTAPLAGH ILHQCRSRTR NLVRSIPPSI 360
  361 PLSIGPLPLP RILPLMGKSN FRPLNTLCKY IVYIAIYRQG TRT

Type	Start	End	Confidence
Cytoplasmic	1	92	0.96
Transmembrane Helix	93	116	0.72
Non-Cytoplasmic	117	122	0.55
Transmembrane Helix	123	146	0.82
Cytoplasmic	147	165	0.68
Transmembrane Helix	166	192	0.79
Non-Cytoplasmic	193	224	0.89
Transmembrane Helix	225	246	0.89
Cytoplasmic	247	253	0.74
Transmembrane Helix	254	276	0.84
Non-Cytoplasmic	277	287	0.81
Transmembrane Helix	288	310	0.75
Cytoplasmic	311	403	0.80