YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ntl-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.94
Transmembrane Helix	33	52	0.89
Non-Cytoplasmic	53	60	0.75
Transmembrane Helix	61	83	0.87
Cytoplasmic	84	100	0.83
Transmembrane Helix	101	123	0.84
Non-Cytoplasmic	124	192	0.89
Transmembrane Helix	193	213	0.89
Cytoplasmic	214	221	0.78
Transmembrane Helix	222	244	0.86
Non-Cytoplasmic	245	270	0.81
Transmembrane Helix	271	292	0.85
Cytoplasmic	293	303	0.77
Transmembrane Helix	304	328	0.88
Non-Cytoplasmic	329	362	0.87
Transmembrane Helix	363	384	0.89
Cytoplasmic	385	404	0.90
Transmembrane Helix	405	428	0.91
Non-Cytoplasmic	429	436	0.78
Transmembrane Helix	437	458	0.96
Cytoplasmic	459	478	0.93
Transmembrane Helix	479	500	0.95
Non-Cytoplasmic	501	512	0.84
Transmembrane Helix	513	535	0.91
Cytoplasmic	536	590	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNQPPTTN ATRKDKRIER DENRGQWKSK SEFILSLLGY AIGIGNVWRF PYLCYRSGGA  60
   61 AFLIPYLLMV ILAGIPLFYM EILIGQFSST GCTGMFRMTP LLKGTGIAQV VVNAYCVCYY 120
  121 SVIISYPIRM IFYCFFKKVP WEDCSNSWNT DDCVTASDMG KQNSSDVFKT SADEFFHLEV 180
  181 LRISTDISDL GGMVWEQLTA LIITWIIIYF CLMRGIKSVG KVVYFTVPFP YLLLFILLIR 240
  241 GATLPGAWKG IKFYLYPEWH RLLDLKVWAD AAVQMFFGIG PGWGGIVNMA SFSSFRNNAK 300
  301 CDSVLIVSIN VFTSLLAGFV VFSVLGFLSE KSGIPVESVA TGGAGLAFVT YPEAIALLPV 360
  361 PQLWALMFFF MLFLLGIDSV FVQLEAIMSS ILDEWYWVRS HKCKLTLISC LIFLGLSSIM 420
  421 CTNGGMFILQ LFDWYSSAIA VIVICLVEII MVAWIYGIKN FMLDVEFMLG KRPTLYWRIV 480
  481 WQVVTPVIII FILITSIVFI RTITYNNIPY PQWAIIIGWA SCFTSVMWIP LYIFYIMIRK 540
  541 RATLCDSLKK RLKPLDWTPA DPQDRAEYEA FRRQRRMPGF MSDTDMESSK