YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Ndae1-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	512	0.92
Transmembrane Helix	513	532	0.95
Cytoplasmic	533	543	0.72
Transmembrane Helix	544	565	0.83
Non-Cytoplasmic	566	595	0.78
Transmembrane Helix	596	620	0.89
Cytoplasmic	621	627	0.72
Transmembrane Helix	628	647	0.74
Non-Cytoplasmic	648	702	0.90
Transmembrane Helix	703	721	0.92
Cytoplasmic	722	736	0.78
Transmembrane Helix	737	757	0.84
Non-Cytoplasmic	758	788	0.93
Transmembrane Helix	789	809	0.93
Cytoplasmic	810	829	0.85
Transmembrane Helix	830	855	0.85
Non-Cytoplasmic	856	892	0.83
Transmembrane Helix	893	927	0.65
Cytoplasmic	928	961	0.75
Transmembrane Helix	962	979	0.95
Non-Cytoplasmic	980	985	0.71
Transmembrane Helix	986	1003	0.79
Cytoplasmic	1004	1099	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKNEYIEL PWTMNSSSGD DEAPKDPRTG GEDFTQQFTE NDFEGHRAHT VYVGVHVPGG  60
   61 RRHSQRRRKH HHSGPGGGGG GGGGGGSIGG SGSVGGGAGK DNVSEKQQEV ERPVTPPAQR 120
  121 VQFILGEDVD DGTHVSHPLF SEMGMLVKEG DEIEWKETAR WIKFEEDVEE GGNRWSKPHV 180
  181 ATLSLHSLFE LRRLLVNGSV MLDMEAQNLE VMADLVCDHM VSAGTLPPGV KDKVKDALLR 240
  241 RHRHQHEYAK KTRLPIIRSL ADMRNHSSSK KKKSNSKHSR PAQNLSSITE DMVKSPSNQS 300
  301 MARPGSGTEL SEQQHKGNTH FMRKIPPGAE ASNILVGEVD FLERTLSCFI RLSQAVVLGD 360
  361 LTEVPVPTRF VFILLGPPGS QSNFHEIGRA MATLMSDEIF HEVAYRARKR DHLLSGVDEF 420
  421 LDAVTVLPPG EWDPTIRIEP PAAIPSQEVR KRPPELPKEE VDEEEEEARL REENGLSRTG 480
  481 RLFGGLINDI KRKAPWYISD YKDALSMQCV ASWIFLYFAC LSPIITFGGL LAEATGKHMA 540
  541 AMESLVSGFV CGMGYGFFSG QPLTILGSTG PVLVFESIIY EFCLKMGWDY MTFRFWIGMW 600
  601 VAGICIVLTA IDASALVCYI TRFTEENFAT LIAFIFIYKA IENVMVIGKN FPVNQGIYDC 660
  661 VCTPPIGSNA SVIDYAKYNW DSCESYNGTL VGGDCGTPPT ENVFLMSVVL CAGTFLISTV 720
  721 LKEFKNALFF PSIVRQYISD FSVLIAIFAM SFFDYSLGVP TQKLEVPNEL KPTLSTRGWL 780
  781 IPPFVEKNPW WSAIIAVFPA LLGTILIFMD QQITAVIVNR KENKLKKGCG YHLDLFILSI 840
  841 LIAICSMMGL PWFVAATVLS INHVNSLKLE SECSAPGEKP QFLGVREQRV THILIFLTIG 900
  901 VSVLLTPLLG NIPMPVLFGV FLYMGVASLK GLQFFDRILI MFMPAKYQPD YMFLRQVPIK 960
  961 RVHLFTMIQL ACLIILWLIK SFSQTSILFP LMLVVMIGIR KALDLVFTRR ELKILDDIMP1020
 1021 EMTKRAAADD LHKLDAEVGL LARIFPWGKG SRSRVVTKPP GLDDGIVGSG GAVGAGLITC1080
 1081 TTSNANEKEF EAQSSLLKK